Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C18
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 31 0.26
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 27 3.2
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.3
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 27 4.3
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 4.3
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 26 7.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 7.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 7.4
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 7.4
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.7 bits (66), Expect = 0.26
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 223 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 324
+R H+ GR+ ELDR+ T+L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 146 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 48
Y ES + D+ + SH+ A +I Q R+G +
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 301 FPCVPTQSFVDPIHLKICQYPHGGL 227
F +P Q+F H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 401 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 538
RA +++ + +KR DI + DNW ND+ C + G +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -1
Query: 173 WSTGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLF 6
WS G + +ESI+ + +L ++ R + +N S H + T +F
Sbjct: 242 WSHGLTPEVFWQNTESILTCPEEQLEQKISLLLSSTRNSPTMSNSSLTHLLPTPIF 297
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 7.4
Identities = 20/89 (22%), Positives = 36/89 (40%)
Frame = +2
Query: 407 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMF 586
R S N S S +KR +S+ +S + +D + K ++ H S + I K +
Sbjct: 31 RSSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILKGL--CI 88
Query: 587 ESGAWDVTDLSXAVXTQERWGXVEXPRGN 673
++G D + W ++ P N
Sbjct: 89 KAGGVDPVAREDHEYPEWLWSLLDEPAPN 117
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 7.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -1
Query: 209 HVSNAGSG*LRFWSTGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
H+S G R ++ GG SY A+ + R D+ V ++ SAAL + + R + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489
Query: 41 ISRRH 27
RRH
Sbjct: 490 GIRRH 494
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 7.4
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -1
Query: 209 HVSNAGSG*LRFWSTGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 42
H+S G R ++ GG SY A+ + R D+ V ++ SAAL + + R + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489
Query: 41 ISRRH 27
RRH
Sbjct: 490 GIRRH 494
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 485 WPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFES 592
WP D+ T FG+ D D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,766
Number of Sequences: 5004
Number of extensions: 61894
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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