Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C13
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 210 2e-55
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 34 0.026
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.56
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.74
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 29 0.97
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.3
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 27 2.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.2
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 3.9
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 5.2
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 210 bits (512), Expect = 2e-55
Identities = 94/130 (72%), Positives = 111/130 (85%), Gaps = 1/130 (0%)
Frame = +2
Query: 242 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFVN 418
DF I+P + S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG +N
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 419 VDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQXNAGKEY 598
+DKP+NPSSHEV +W+K+IL+VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQ +AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 599 VXVXNLHSXV 628
V V LH V
Sbjct: 129 VCVLRLHDSV 138
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 666 LXGXLFXRPPLFSAVNR 716
L G LF RPPL SAV R
Sbjct: 151 LTGALFQRPPLISAVKR 167
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.026
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 488 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQXNAGKEY 598
K GH GTLDP +G L+V + T+ + S + K Y
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTY 143
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 296 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 385
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 311 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFVNVDKPSNPSSHE 451
++DR + + NH +P P +P K P+ + ++ N D + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 28.7 bits (61), Expect = 0.97
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 422 DKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQXNAGKEYV 601
+KP PS H + S+ K+E T ++ T K G IV R S N GKE V
Sbjct: 563 EKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV--PRGN--YYSIKNIGKEAV 618
Query: 602 XVXNLHSXVXNIQKXPQGLG 661
+ H+ ++ +G+G
Sbjct: 619 RLYYTHA-TDTLENKRRGIG 637
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 299 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 409
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +2
Query: 413 VNVDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQXNAGK 592
+N D P P SHE+ IL SG + P+ CI+ K N G
Sbjct: 76 INEDDPQEPKSHEIV-----ILLASDGRSSGNMAPETFN---QCIENRINYAK-HHNYGF 126
Query: 593 EYVXVXNLH 619
EYV V ++
Sbjct: 127 EYVNVSQMN 135
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 395 YVKSGFVNVDKPSNPSSHEVXSWIKRILKVEKTGHS 502
++K + +D+P+N E +W++ L E GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 324 KRSKFFNNKGQ*AVSSFFT 268
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 1 YWIWPSIVLXXESSFNKQCPIIGHCLPK*LR 93
YW +PS SF+K CP+ L K +R
Sbjct: 443 YWNFPSEPFPRTMSFSKMCPLCCTTLSKFVR 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,577
Number of Sequences: 5004
Number of extensions: 49534
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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