Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C13
(772 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita ... 215 1e-55
BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita ... 215 1e-55
AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein. 215 1e-55
AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein. 215 1e-55
AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein. 215 1e-55
AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein. 215 1e-55
U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein. 215 1e-55
BC030601-1|AAH30601.1| 349|Homo sapiens TruB pseudouridine (psi... 42 0.002
AL355340-1|CAH73219.1| 349|Homo sapiens TruB pseudouridine (psi... 42 0.002
AK223567-1|BAD97287.1| 349|Homo sapiens TruB pseudouridine (psi... 42 0.002
AF448144-1|AAL40350.1| 349|Homo sapiens TruB pseudouridine synt... 42 0.002
BC065005-1|AAH65005.1| 145|Homo sapiens mitochondrial ribosomal... 32 2.6
AL109615-2|CAI19245.1| 145|Homo sapiens protein ( Human DNA seq... 32 2.6
>BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 215 bits (526), Expect = 1e-55
Identities = 95/149 (63%), Positives = 120/149 (80%)
Frame = +2
Query: 182 REXKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 361
++ ++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 362 GNSPLKRPISDYVKSGFVNVDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIV 541
G++PLKR I DY+++GF+N+DKPSNPSSHEV +WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 542 CIDRATRLVKSQXNAGKEYVXVXNLHSXV 628
CI+RATRLVKSQ +AGKEYV + LH+ +
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAI 163
>BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 215 bits (526), Expect = 1e-55
Identities = 95/149 (63%), Positives = 120/149 (80%)
Frame = +2
Query: 182 REXKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 361
++ ++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 362 GNSPLKRPISDYVKSGFVNVDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIV 541
G++PLKR I DY+++GF+N+DKPSNPSSHEV +WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 542 CIDRATRLVKSQXNAGKEYVXVXNLHSXV 628
CI+RATRLVKSQ +AGKEYV + LH+ +
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAI 163
>AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 215 bits (526), Expect = 1e-55
Identities = 95/149 (63%), Positives = 120/149 (80%)
Frame = +2
Query: 182 REXKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 361
++ ++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 362 GNSPLKRPISDYVKSGFVNVDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIV 541
G++PLKR I DY+++GF+N+DKPSNPSSHEV +WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 542 CIDRATRLVKSQXNAGKEYVXVXNLHSXV 628
CI+RATRLVKSQ +AGKEYV + LH+ +
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAI 163
>AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein.
Length = 524
Score = 215 bits (526), Expect = 1e-55
Identities = 95/149 (63%), Positives = 120/149 (80%)
Frame = +2
Query: 182 REXKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 361
++ ++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 362 GNSPLKRPISDYVKSGFVNVDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIV 541
G++PLKR I DY+++GF+N+DKPSNPSSHEV +WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 542 CIDRATRLVKSQXNAGKEYVXVXNLHSXV 628
CI+RATRLVKSQ +AGKEYV + LH+ +
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAI 163
>AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 215 bits (526), Expect = 1e-55
Identities = 95/149 (63%), Positives = 120/149 (80%)
Frame = +2
Query: 182 REXKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 361
++ ++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 362 GNSPLKRPISDYVKSGFVNVDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIV 541
G++PLKR I DY+++GF+N+DKPSNPSSHEV +WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 542 CIDRATRLVKSQXNAGKEYVXVXNLHSXV 628
CI+RATRLVKSQ +AGKEYV + LH+ +
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAI 163
>AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 215 bits (526), Expect = 1e-55
Identities = 95/149 (63%), Positives = 120/149 (80%)
Frame = +2
Query: 182 REXKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 361
++ ++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 362 GNSPLKRPISDYVKSGFVNVDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIV 541
G++PLKR I DY+++GF+N+DKPSNPSSHEV +WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 542 CIDRATRLVKSQXNAGKEYVXVXNLHSXV 628
CI+RATRLVKSQ +AGKEYV + LH+ +
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAI 163
>U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein.
Length = 514
Score = 215 bits (525), Expect = 1e-55
Identities = 95/149 (63%), Positives = 120/149 (80%)
Frame = +2
Query: 182 REXKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 361
++ ++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFFIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 362 GNSPLKRPISDYVKSGFVNVDKPSNPSSHEVXSWIKRILKVEKTGHSGTLDPKVTGCLIV 541
G++PLKR I DY+++GF+N+DKPSNPSSHEV +WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 542 CIDRATRLVKSQXNAGKEYVXVXNLHSXV 628
CI+RATRLVKSQ +AGKEYV + LH+ +
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAI 163
>BC030601-1|AAH30601.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 (E. coli) protein.
Length = 349
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 461 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQXNAGKEYVXVXNL 616
W KR + K GH GTLD G L+V I T+++ S + K Y + L
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGEL 155
>AL355340-1|CAH73219.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 (E. coli) protein.
Length = 349
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 461 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQXNAGKEYVXVXNL 616
W KR + K GH GTLD G L+V I T+++ S + K Y + L
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGEL 155
>AK223567-1|BAD97287.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 variant protein.
Length = 349
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 461 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQXNAGKEYVXVXNL 616
W KR + K GH GTLD G L+V I T+++ S + K Y + L
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGEL 155
>AF448144-1|AAL40350.1| 349|Homo sapiens TruB pseudouridine
synthase-like protein 1 protein.
Length = 349
Score = 41.9 bits (94), Expect = 0.002
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 461 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQXNAGKEYVXVXNL 616
W KR + K GH GTLD G L+V I T+++ S + K Y + L
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGEL 155
>BC065005-1|AAH65005.1| 145|Homo sapiens mitochondrial ribosomal
protein L14 protein.
Length = 145
Score = 31.9 bits (69), Expect = 2.6
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 49 KQCPIIGHCLPK*LRRSPKIKSKKRYVLIHQNDGGTAARITTHXQRRXKKKQG 207
K+ I+GHC+P R +P+ S VLI N RI T +K++G
Sbjct: 82 KKALIVGHCMPG-PRMTPRFDS-NNVVLIEDNGNPVGTRIKTPIPTSLRKREG 132
>AL109615-2|CAI19245.1| 145|Homo sapiens protein ( Human DNA
sequence from clone RP5-1120P11 on chromosome
6p12.3-21.2.novel gene, the GLRXP gene for glutaredoxin
(thioltransferase) ).
Length = 145
Score = 31.9 bits (69), Expect = 2.6
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 49 KQCPIIGHCLPK*LRRSPKIKSKKRYVLIHQNDGGTAARITTHXQRRXKKKQG 207
K+ I+GHC+P R +P+ S VLI N RI T +K++G
Sbjct: 82 KKALIVGHCMPG-PRMTPRFDS-NNVVLIEDNGNPVGTRIKTPIPTSLRKREG 132
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,642,232
Number of Sequences: 237096
Number of extensions: 1799716
Number of successful extensions: 3661
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3661
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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