Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C09
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 316 1e-86
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 308 4e-84
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 305 2e-83
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 133 1e-31
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 133 1e-31
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 132 3e-31
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 75 4e-14
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 40 0.002
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 38 0.008
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 33 0.31
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 31 1.2
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 28 6.7
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 28 8.8
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 28 8.8
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 28 8.8
U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biologic... 28 8.8
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 28 8.8
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 28 8.8
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 28 8.8
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 316 bits (776), Expect = 1e-86
Identities = 149/197 (75%), Positives = 168/197 (85%)
Frame = +1
Query: 181 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 360
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 361 ANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 540
N+W+ AVT+QNV+AAMVFEFL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 541 PQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGXIGWRREGXSTDETXWSLMY*NYVN 720
PQN+D GVLKTFITQQG+++A+KEEQ+QITSQVTG IGWRREG L YVN
Sbjct: 121 PQNTDPGVLKTFITQQGVRTATKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVN 180
Query: 721 LLMSPQGQVXLLXWLGK 771
LLM+ QGQV GK
Sbjct: 181 LLMNQQGQVLSAHVAGK 197
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 308 bits (755), Expect = 4e-84
Identities = 149/203 (73%), Positives = 168/203 (82%), Gaps = 6/203 (2%)
Frame = +1
Query: 181 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 360
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 361 ANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 540
N+W+ AVT+QNV+AAMVFEFL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 541 PQNSDTGVLKTFITQQGIKSA------SKEEQAQITSQVTGXIGWRREGXSTDETXWSLM 702
PQN+D GVLKTFITQQG+++A +KEEQ+QITSQVTG IGWRREG L
Sbjct: 121 PQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 180
Query: 703 Y*NYVNLLMSPQGQVXLLXWLGK 771
YVNLLM+ QGQV GK
Sbjct: 181 VIEYVNLLMNQQGQVLSAHVAGK 203
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 305 bits (749), Expect = 2e-83
Identities = 148/203 (72%), Positives = 167/203 (82%), Gaps = 6/203 (2%)
Frame = +1
Query: 181 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 360
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 361 ANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 540
N+W+ AVT+QNV+AAMVF FL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 541 PQNSDTGVLKTFITQQGIKSA------SKEEQAQITSQVTGXIGWRREGXSTDETXWSLM 702
PQN+D GVLKTFITQQG+++A +KEEQ+QITSQVTG IGWRREG L
Sbjct: 121 PQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 180
Query: 703 Y*NYVNLLMSPQGQVXLLXWLGK 771
YVNLLM+ QGQV GK
Sbjct: 181 VIEYVNLLMNQQGQVLSAHVAGK 203
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 133 bits (322), Expect = 1e-31
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 2/187 (1%)
Frame = +1
Query: 193 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 366
+F+ + KG+ +ISR YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 367 IWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 546
I+L + + NV+ M+ FL K ++V YF + EE++++NFV+IYELLDE++DFG+PQ
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQ 124
Query: 547 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGXIGWRREGXSTDETXWSLMY*NYVNLL 726
+++ +L+ +ITQ+G K S VT + WR EG + L VN+L
Sbjct: 125 TTESRILQEYITQEGQKLISAPRPPM---AVTNAVSWRSEGIKYRKNEVFLDVIESVNML 181
Query: 727 MSPQGQV 747
S G V
Sbjct: 182 ASANGTV 188
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 133 bits (322), Expect = 1e-31
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 2/187 (1%)
Frame = +1
Query: 193 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 366
+F+ + KG+ +ISR YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 367 IWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 546
I+L + + NV+ M+ FL K ++V YF + EE++++NFV+IYELLDE++DFG+PQ
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQ 124
Query: 547 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGXIGWRREGXSTDETXWSLMY*NYVNLL 726
+++ +L+ +ITQ+G K S VT + WR EG + L VN+L
Sbjct: 125 TTESRILQEYITQEGQKLISAPRPPM---AVTNAVSWRSEGIKYRKNEVFLDVIESVNML 181
Query: 727 MSPQGQV 747
S G V
Sbjct: 182 ASANGTV 188
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 132 bits (319), Expect = 3e-31
Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Frame = +1
Query: 184 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHIKR 360
I GLF+ + KG V+ISR YR D+ + ++ F ++ + SPV S+ +IK
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKY 62
Query: 361 ANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 540
N++L ++K+N + +V L KI++V YF + EE +++NFV+IYEL DE+LDFGY
Sbjct: 63 MNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGY 122
Query: 541 PQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGXIGWRREGXSTDETXWSLMY*NYVN 720
PQ +++ +L+ FITQQG ++ E + VT + WR EG + L VN
Sbjct: 123 PQTTESKILQEFITQQG----NRLETVRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVN 178
Query: 721 LLMSPQGQV 747
+L + QG V
Sbjct: 179 MLANAQGTV 187
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 75.4 bits (177), Expect = 4e-14
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Frame = +1
Query: 181 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF---RVNVIHARQQVRSPVTNIARTSFFH 351
M+ LF N G+VL+ + ++ I R+ D F + IH P+ + +
Sbjct: 1 MLNSLFFVNSSGDVLLEKHWKSVIHRSICDYFFDIQKKSIHPEDV--PPIISTPHHYLIN 58
Query: 352 IKRANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 531
+ + N++L AV MV EFL ++I YF + S+ ++K N V+++ELLDE+LD
Sbjct: 59 VYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLD 118
Query: 532 FGYPQNSDTGVLKTFI 579
G+P ++ +L+ I
Sbjct: 119 NGFPLVTEMNILQDLI 134
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 361 ANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG- 537
A+++ +QN + + E + + ++++ YFG + E +I NF Y +LDE L G
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGE 122
Query: 538 YPQNSDTGVLKTFITQQGIK 597
+ S VLK Q I+
Sbjct: 123 IQETSKKQVLKAIAAQDLIQ 142
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 37.9 bits (84), Expect = 0.008
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Frame = +1
Query: 199 VYNHKGEVLISRVYRDDIGRNA----VDAFRVNVIHARQQVRSPVTNIARTSFFHIKRA- 363
+ + G++L++R + +D+ R+ VDAF + + ++ T + S ++
Sbjct: 8 ILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVYHPL 67
Query: 364 -NIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFG 537
NI+L VT +N + E L + V+ Y E+ I ++F LI+ DE++ G
Sbjct: 68 DNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIF-AFDEVVTLG 126
Query: 538 YPQNSDTGVLKTF 576
Y ++ + ++TF
Sbjct: 127 YRESVNLAQIRTF 139
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 32.7 bits (71), Expect = 0.31
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Frame = +1
Query: 181 MIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPV-TNIARTSFFH 351
MI + + N G+ +++ Y DD + + + +HA VR TN F
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMHFDDDEKQKL----IEEVHACVTVRDAKHTNFVEFRNFK 56
Query: 352 I---KRANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDE 522
I + A ++ + E + ++V+ YF + E ++ NF +Y ++DE
Sbjct: 57 IVYRRYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDE 116
Query: 523 ILDFG-YPQNSDTGVLKTFI 579
+ G + S T VLK +
Sbjct: 117 MFLAGEIRETSQTKVLKQLL 136
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 226 ISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFF 348
+ R++RDDIG V++ N I R++ ++ + + FF
Sbjct: 1761 VFRIHRDDIGMILVNSLNDNQIEVRERATDALSTLLQAKFF 1801
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 166 EASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH 294
+++P I +F ++ G S Y DDI + A+D FRV H
Sbjct: 264 QSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGESH 306
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 319 VTNIARTSFFHIKRANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENI----- 483
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 484 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 615
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 319 VTNIARTSFFHIKRANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENI----- 483
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 399
Query: 484 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 615
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 400 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 446
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 319 VTNIARTSFFHIKRANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENI----- 483
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 484 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 615
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biological
timing) abnormalityprotein 1 protein.
Length = 187
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Frame = -1
Query: 555 IRILRVTKVQDLIKQLIDQNKVILDVLFRNLAKIRLHH--INDLQQELKYHGRVHILLCD 382
+ +L+ + V +IK++ D+ K LD + R AK + H + + Y V L
Sbjct: 41 LAVLQGSSVGSVIKKMWDEEKEHLDTMERLAAKHNVPHTVFSPVFSVAAYALGVGSALLG 100
Query: 381 CCQPNICTLDMEERCACNVGNR*SHLLASMDHIHSECVHSIT 256
CT+ +EE + ++ LLA H E + +T
Sbjct: 101 KEGAMACTIAVEELIGQHYNDQLKELLADDPETHKELLKILT 142
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 319 VTNIARTSFFHIKRANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENI----- 483
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 484 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 615
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 319 VTNIARTSFFHIKRANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENI----- 483
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 484 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 615
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +1
Query: 319 VTNIARTSFFHIKRANIWLAAVTKQNVDAAMVFEFLLKIIDVMQSYFGKISEENI----- 483
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 399
Query: 484 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 615
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 400 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,677,282
Number of Sequences: 27780
Number of extensions: 373174
Number of successful extensions: 1056
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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