Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_C08
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    28   1.8  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    28   1.8  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   2.3  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 263 FAVSPVPQRRGTSHPTGSEMSPKMFIGRRLQ 355
           +A+ P+P++   S  +G  +SP +FI RR+Q
Sbjct: 62  YAIPPLPRKYTVSSFSGGSLSP-IFIARRMQ 91


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 223 RSMMMVEYTRTREIRRQPSAPETRNKPPYWVRNV-SENV 336
           R  ++   T T  IR+    P+  NKPP W+  V ++N+
Sbjct: 187 RQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNI 225


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 585 KENIYCLQPPTIEHARHSALPEQATFDLXATVQYTVIPATSPMASRXL 728
           KE+I   QP   +HAR  +LP Q T +    ++   IP+  P   + L
Sbjct: 741 KESIPSKQPTEGQHARQESLPSQQTTE-TKHLRKESIPSKQPSGGQQL 787



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 585 KENIYCLQPPTIEHARHSALPEQAT 659
           KE+I   QP   +HAR  +LP Q T
Sbjct: 677 KESIPSKQPTEGQHARQESLPSQQT 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,208
Number of Sequences: 5004
Number of extensions: 69956
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)