Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C08
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0080 + 14935664-14935796,14943858-14944175,14944352-149451... 32 0.60
03_05_0024 - 19934529-19935298,19935359-19935871,19936147-199366... 31 0.79
08_02_0599 + 19156896-19156960,19157201-19157329,19158536-19158653 30 1.8
05_01_0601 + 5390484-5391692 30 1.8
06_03_0615 - 22761375-22761760,22762218-22765026 30 2.4
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690... 30 2.4
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362... 29 3.2
07_03_1436 - 26543846-26546806 29 3.2
10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732... 29 4.2
10_08_0358 - 17162348-17162368,17162532-17163077 29 4.2
06_03_1388 - 29822789-29823307 29 4.2
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905... 28 7.4
04_03_0895 + 20633554-20634480 28 7.4
09_01_0067 + 1001137-1002708,1003476-1003529 28 9.7
07_03_0383 - 17476271-17479228,17480466-17480750 28 9.7
>02_03_0080 +
14935664-14935796,14943858-14944175,14944352-14945199,
14945249-14945521
Length = 523
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -1
Query: 225 PRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNI 100
P +G +GS H+ +R +P + T PS++QR+ T++ I
Sbjct: 178 PTTGGSGSTNHKDRKR-KPKELVATTTPSSRQRSRVNTSDKI 218
>03_05_0024 -
19934529-19935298,19935359-19935871,19936147-19936635,
19936738-19937044,19937104-19937130
Length = 701
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 225 PRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNI 100
P +G +GS H+ +R +P D T PS++QR+ T++ I
Sbjct: 354 PAAGGSGSNNHKDRKR-KPEDLVALTSPSSRQRSRVNTSDKI 394
>08_02_0599 + 19156896-19156960,19157201-19157329,19158536-19158653
Length = 103
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 286 ETRNKPPYWVRNVSENVHRTKTARVKRRNVSATEPAGCHALSRIANVLSWNSLK*GRL 459
+T+N P V N+ NVHR + +RR + T C AN+L W L RL
Sbjct: 12 QTKNDPSSLVSNLPPNVHRAQAEAFRRRWIQRT---SCG-----ANMLGWPDLHDSRL 61
>05_01_0601 + 5390484-5391692
Length = 402
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = +3
Query: 561 WAGQPPACKENIYCLQPPTIEHARHSALPEQATFDLXATVQYTVIPATSPMASRXLSAWL 740
W G +YC PP A + + A DL +PA + + L
Sbjct: 61 WQGPNVCAYRGVYCSAPPDDAAASGAVV---AGIDLNRANLRGTLPAAVSLLAHLTFLHL 117
Query: 741 STDRLLGYGPDSL 779
+++RL G PDSL
Sbjct: 118 NSNRLAGQPPDSL 130
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 568 PAHFPSAWQLRLWSPTT*YPCGQEYTALSPNSRPVKVTFP 449
PA PS L W PT PC + SP SR V ++ P
Sbjct: 40 PAAAPSP-VLPSWDPTAATPCSWQGVTCSPQSRVVSLSLP 78
>01_01_0880 +
6903535-6903932,6904931-6905022,6905601-6905680,
6905885-6905926,6906001-6906128,6906530-6906710,
6906801-6906979,6907469-6907717,6907950-6908193
Length = 530
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = -1
Query: 456 PSLFQAVPTQ-DIRDPA*CMTS--RRLRRRDISSFYSCSLRPMNIFGDISDPVGWLVPRL 286
P +FQ VP++ ++ + S +R RR+ + S + +NI +D + W P
Sbjct: 193 PQMFQFVPSEKQVKAANKLLKSLPQRRRRKKLDGVPVFSAQNLNIAVATNDGIRWYTPYF 252
Query: 285 WGTGLTANFSGSCIFDHHHRPRSGSAGSCRHRRHRR 178
+ L N + + H H S RH R RR
Sbjct: 253 FDKNLLDNILEASMDQHFH-----SMVQNRHTRRRR 283
>11_01_0467 +
3621266-3621401,3621531-3622699,3622815-3623128,
3623276-3623937,3624040-3624401
Length = 880
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 388 PAGCHALSRIAN-VLSWNSLK*GRLPSLVDCSEIR 489
PA L R+ VLS+N L+ GR+P L +CS +R
Sbjct: 73 PASLGHLHRLQTLVLSYNKLQ-GRIPDLANCSNLR 106
>07_03_1436 - 26543846-26546806
Length = 986
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 225 PRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNI 100
P +G +GS H+ +R +P + T PS++QR+ T + I
Sbjct: 619 PTTGGSGSNNHKDRKR-KPEELVATTSPSSRQRSRVNTFDKI 659
>10_08_1024 +
22371260-22371481,22371514-22372188,22372291-22373236,
22389377-22389552
Length = 672
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -1
Query: 258 SGSCIFDHHHRPRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNI 100
SG+ + P +G +GS H+ +R +P + T PS++QR T + I
Sbjct: 392 SGTTWKPKNDTPTAGGSGSNNHKDRKR-KPEELVATTSPSSRQRPRVNTFDKI 443
>10_08_0358 - 17162348-17162368,17162532-17163077
Length = 188
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -3
Query: 739 SQALXSREAIGDVAGMTVY-WTVAXRS-KVACSGRAECLACSIVGGW 605
++ + +R A VA +TV W +A R+ +A G A C+A S GGW
Sbjct: 87 AELMVNRCAWEAVALVTVVLWLLATRAGTLALCGAAACVASSAAGGW 133
>06_03_1388 - 29822789-29823307
Length = 172
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 237 HHHRPRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRA 124
HH P S +A + ++H++P+ RPS++ RA
Sbjct: 22 HHLNPASSAAAAASAKQHQQPRARLAVTTARPSSRTRA 59
>09_02_0420 +
9051728-9051754,9053244-9053530,9055263-9055500,
9057010-9057204,9058075-9058339,9058520-9058827
Length = 439
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 582 RLVVGQPTFRQP-GSSGSGVRQRDTR 508
R G P RQP GSSGSG R R R
Sbjct: 317 RRATGHPKGRQPPGSSGSGARARQHR 342
>04_03_0895 + 20633554-20634480
Length = 308
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 216 GSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNISTC 91
GS G+ + RP P +A+P PS + T T + +TC
Sbjct: 257 GSGGNTSNGGAARPPPSYYADPFVPSPRHLLATPTVPSPATC 298
>09_01_0067 + 1001137-1002708,1003476-1003529
Length = 541
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -1
Query: 237 HHHR--PRSGSAGSCRHRRHRRPQPLDWAEPTRPSAKQRALTTTTNNISTCFILLFQHTI 64
HHHR PR+ S H PQPL + P+A+ + ++ F LL
Sbjct: 11 HHHRHPPRNPPPPSPPPADHAPPQPLPTPDDDAPAAEDHTADLPDDLLAVVFGLLGSADR 70
Query: 63 YMDILYGRRALTPRASLRI 7
L RR L+ A+ R+
Sbjct: 71 KRCSLVCRRWLSVDAASRL 89
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 406 LSRIANVLSWNSLK*GRLPSLVD 474
+S ++N+ SW+ ++ G +PSLVD
Sbjct: 821 ISEMSNLKSWSGIEEGDMPSLVD 843
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,740,992
Number of Sequences: 37544
Number of extensions: 547212
Number of successful extensions: 1757
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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