Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C08
(789 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical pr... 48 6e-06
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 42 4e-04
U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical pr... 35 0.058
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 31 1.2
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 31 1.2
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 31 1.2
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p... 29 2.9
Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GA... 29 2.9
AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GA... 29 2.9
AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GA... 29 2.9
AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GA... 29 2.9
AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GA... 29 2.9
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 29 3.8
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 29 3.8
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 29 3.8
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 29 3.8
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 29 5.0
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro... 29 5.0
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical... 29 5.0
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 28 6.6
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 28 6.6
>U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical
protein T07H6.5 protein.
Length = 575
Score = 85.4 bits (202), Expect = 4e-17
Identities = 43/117 (36%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = +3
Query: 384 GACGMSCIKPDRECPELEQPEIGKVTFTGRL-FGDKAVYSCPHGYHVVGLQSRSCQADGK 560
G CG+SC+ P C L E G + G L FG A Y C GY +VG R CQA+ +
Sbjct: 4 GECGLSCVNPIAMCHPLPNIENGFIRTAGDLRFGSNAEYGCNKGYILVGASQRRCQANKE 63
Query: 561 WAGQPPACKENIYCLQPPTIEHARHSALPEQATFDLXATVQYTVIPATSPMASRXLS 731
W+ P C+ + C PP I A H +DL A V Y IP ++ LS
Sbjct: 64 WSSSQPVCRLQLKCGPPPEIPFAVHDGSSFSGEYDLDAEVAYNCIPGYHKFNAKGLS 120
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/67 (40%), Positives = 33/67 (49%)
Frame = +3
Query: 420 ECPELEQPEIGKVTFTGRLFGDKAVYSCPHGYHVVGLQSRSCQADGKWAGQPPACKENIY 599
EC P GKV + + YSC HGY +VG R C A+G W G P C+E I
Sbjct: 203 ECSRPSSPLHGKVVGSSLTYQSVVTYSCDHGYRLVGQVQRICLAEGIWGGNEPRCEE-IR 261
Query: 600 CLQPPTI 620
C PT+
Sbjct: 262 CSVLPTL 268
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 417 RECPELEQPEIGKVTFTGRLFGDKAVYSCPHGYHVVGLQSRSCQADGKWAGQPPACKENI 596
R CP+ E G + YSC G+ +VG SR C ++G+W +P CK
Sbjct: 144 RACPDPGDIENGLREGDTFEYPHHVKYSCNPGFLLVGSTSRQCSSNGEWTNEPANCKAT- 202
Query: 597 YCLQPPTIEHAR 632
C +P + H +
Sbjct: 203 ECSRPSSPLHGK 214
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 477 FGDKAVYSCPHGYHVVGLQSRSCQADGKWAGQPPAC 584
FG AV+ C G C DG+W+ P C
Sbjct: 280 FGAVAVFRCLETMTHEGASKAKCMEDGQWSAPIPRC 315
>Z75533-3|CAA99822.1| 868|Caenorhabditis elegans Hypothetical
protein C54G4.4 protein.
Length = 868
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +3
Query: 417 RECPELEQPEIGKVTFTGR--LFGDKAVYSCPHGYHVVGLQS-------RSCQADGKWAG 569
+ C + Q + G++ + LF + Y C +G+H+ S R CQ+DG W+G
Sbjct: 537 KSCGAVRQWKFGRIKLLNKTTLFESEVEYECSNGWHLANSPSPSYRSLRRVCQSDGIWSG 596
Query: 570 QPPACKENIYCLQPPTIEHARHSALPEQATFDLXA 674
P C E + C +PP I + R E +TF+ A
Sbjct: 597 SEPTC-ELVDCGRPPLIANGRVDV--ESSTFESAA 628
Score = 44.8 bits (101), Expect = 7e-05
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 489 AVYSCPHGYHVVGLQSRSCQADGKWAGQPPACKENIYCLQPPT 617
A YSC G+ ++G + R+C +DG W+ +PP C ++ +P T
Sbjct: 186 AKYSCALGFDLIGSEERTCLSDGSWSDEPPICAIDVAYNKPVT 228
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 402 CIKPDRECPELEQPEIGKVTFTGRLF--GDKAVYSCPHGYHVVGLQSRSCQADGKWAGQP 575
C + C E KVTF+ + G YSC GY + G++ R C +G+W G
Sbjct: 472 CQSKPKFCTSPGVGEATKVTFSSHSYAIGTLCFYSCDSGYDLHGIRQRECAENGRWTGSI 531
Query: 576 PAC 584
P C
Sbjct: 532 PNC 534
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 450 GKVTFTGRLFGDKAVYSCPHGYHVVGLQSRSCQADGKWAGQPPAC 584
G+V F A Y+C G+ ++G +S C G+W P C
Sbjct: 615 GRVDVESSTFESAANYTCHQGFRLIGPESLMCGDRGEWQPATPFC 659
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 399 SCIKPDRECPELEQPEIGKVTFTGRLFGDKAV--YSCPHGYHVVGLQSRSCQADGKWAGQ 572
SC+ R+C + PE G++ T F + + C GY ++G C ADG W G
Sbjct: 687 SCVP--RQCSHIGSPENGQLLSTAERFEYPMIVQFQCAFGYQMMGPDYIQCLADGTWNGT 744
Query: 573 PPAC 584
P C
Sbjct: 745 EPFC 748
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 468 GRLFGDKAVYSCPHGYHVVGLQSRSCQADGKWAGQPPACKENIYCLQPPTIEHARHSALP 647
G +G + C GY G++S C++DG W+ + P C + + C P + +A+ +P
Sbjct: 364 GTGYGSVFRFDCHSGYRREGVESSLCKSDGTWSSKQPNCTK-VACTHLPEVANAK-IEVP 421
Query: 648 EQATFDLXATV 680
++ F A V
Sbjct: 422 DRFLFGDVARV 432
>U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical
protein T07H6.4 protein.
Length = 702
Score = 35.1 bits (77), Expect = 0.058
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +3
Query: 456 VTFTGRLFGDKAVYSCPHGYHVVGLQSRSCQADGKWAGQPPACKENIYC--LQPPTIEH 626
VT T G A + C G+ ++G Q+ C G W+ P C ++C L PP H
Sbjct: 533 VTVTSYRTGGVAHFKCHKGFTLIGEQNLHCTTQGTWSHDFPYCNV-VHCPPLLPPANGH 590
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 480 GDKAVYSCPHGYHVVGLQSRSCQADGKWAGQPPACKENIYCLQPPTIEH 626
GD + C Y + G CQADG+W+ C + YC P +H
Sbjct: 602 GDIVLLGCLPNYMLTGGDFSVCQADGEWSEIKTKC--DGYCRHPGQPDH 648
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 495 YSCPHGYHVVG-LQSRSCQADGKWAGQPPACKENIYC 602
Y C +GY +V + + CQ D KW PP C+ C
Sbjct: 128 YHCDYGYEMVDEVDTMFCQ-DKKWVMTPPMCRGQGLC 163
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 495 YSCPHGYHVVG-LQSRSCQADGKWAGQPPACKENIYC 602
Y C +GY +V + + CQ D KW PP C+ C
Sbjct: 191 YHCDYGYEMVDEVDTMFCQ-DKKWVMTPPMCRGQGLC 226
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 495 YSCPHGYHVVG-LQSRSCQADGKWAGQPPACKENIYC 602
Y C +GY +V + + CQ D KW PP C+ C
Sbjct: 191 YHCDYGYEMVDEVDTMFCQ-DKKWVMTPPMCRGQGLC 226
>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
protein F40G12.3 protein.
Length = 1099
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +3
Query: 480 GDKAVYSCPHGY--HVVG--LQSRSCQADGKWAGQPPAC 584
G++ V+ C + + V G ++ C ADG W+G+P C
Sbjct: 1053 GEQIVHLCKNRFVFEVAGQPMKLYQCMADGSWSGKPEIC 1091
>Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical
protein T21C12.1f protein.
Length = 448
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical
protein T21C12.1e protein.
Length = 506
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical
protein T21C12.1d protein.
Length = 475
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1c protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1b protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +3
Query: 396 MSCIKPDRECPELEQPEIGKVTFTGRLFGDKAVYSCPHGY-HVVGLQS---RSCQADGKW 563
++CI+P P ++ + + G+ CP Y + LQ C GKW
Sbjct: 708 ITCIEPSLNLTYTSSPTSSQIKSSYSV-GELITQVCPQSYVFEIALQPVKIYKCLKTGKW 766
Query: 564 AGQPPAC 584
AG P C
Sbjct: 767 AGSPENC 773
>AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49C protein.
Length = 448
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.3 protein.
Length = 506
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.2 protein.
Length = 475
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.1 protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49A protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 201 TTQQSRSEVDDDGRIYKNPRNSPSAQCPRDEEQATLLGQKC 323
TT S ++ DG +Y + R + +A CP D + + Q C
Sbjct: 141 TTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHC 181
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 504 PHGYHVVGLQSRSC---QADGKWAGQPPACKENIYCLQPPTIEHARHSALPEQATFDLXA 674
PH ++G+Q ++ Q +G A P + + PPT + A P A+ L A
Sbjct: 435 PHRRPIIGMQQQNSAPPQFNGHQALVPSPQSSSAFSRPPPT-QLATQRRAPPLASTGLPA 493
Query: 675 TVQYTVIP 698
TV++ IP
Sbjct: 494 TVRWEAIP 501
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 504 PHGYHVVGLQSRSC---QADGKWAGQPPACKENIYCLQPPTIEHARHSALPEQATFDLXA 674
PH ++G+Q ++ Q +G A P + + PPT + A P A+ L A
Sbjct: 472 PHRRPIIGMQQQNSAPPQFNGHQALVPSPQSSSAFSRPPPT-QLATQRRAPPLASTGLPA 530
Query: 675 TVQYTVIP 698
TV++ IP
Sbjct: 531 TVRWEAIP 538
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 561 TFRQPGSSGSGVRQRDTRVDRS-TRPYLRTVDQ*R*PSLFQAVPTQDIRDPA*CMTSRRL 385
T +P +S + +Q+ T ++ T D R ++ Q V T DI DP C+ + +
Sbjct: 829 TALRPSTSSTPSQQQSTSTAKAMTSSSTSAEDAKRLLAMNQLVQTADICDPTICLMNDDI 888
Query: 384 RRRDISSFYSCSLRPMN 334
+++ YSC + +N
Sbjct: 889 LLIMVTAVYSCGIPLVN 905
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 504 PHGYHVVGLQSRSC---QADGKWAGQPPACKENIYCLQPPTIEHARHSALPEQATFDLXA 674
PH ++G+Q ++ Q +G A P + + PPT + A P A+ L A
Sbjct: 472 PHRRPIIGMQQQNSAPPQFNGHQALVPSPQSSSAFSRPPPT-QLATQRRAPPLASTGLPA 530
Query: 675 TVQYTVIP 698
TV++ IP
Sbjct: 531 TVRWEAIP 538
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
K03H1.5 protein.
Length = 1385
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 474 LFGDKAVYSCPHGYHVVGLQSRSCQADGKWA 566
L GDK V+SC Y++ G R C+ +G W+
Sbjct: 1200 LDGDKVVFSCKPKYYIHGDIERVCR-NGTWS 1229
>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
preproprotein protein.
Length = 1042
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 611 ANDRTREALGSTRASHLRSXRDGPVHCHTGYVT 709
AN R+A G+ + R G +HCH+G +T
Sbjct: 572 ANCGQRQADGTYHPCQIEDTRCGTLHCHSGSIT 604
>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
protein Y37D8A.13 protein.
Length = 1042
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 611 ANDRTREALGSTRASHLRSXRDGPVHCHTGYVT 709
AN R+A G+ + R G +HCH+G +T
Sbjct: 572 ANCGQRQADGTYHPCQIEDTRCGTLHCHSGSIT 604
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 660 FDLXATVQYTVIPATSPMASRXLSAWLSTDRLLGYGP 770
FDL A ++ T + AS S+W +TD L G+ P
Sbjct: 534 FDLGAPIKPTSSASNLSTASPATSSWSNTDLLGGFSP 570
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 660 FDLXATVQYTVIPATSPMASRXLSAWLSTDRLLGYGP 770
FDL A ++ T + AS S+W +TD L G+ P
Sbjct: 534 FDLGAPIKPTSSASNLSTASPATSSWSNTDLLGGFSP 570
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 245 IQEPEKFAVSPVPQRRGTSHPTG-SEMSPKMFIG 343
I + ++ VSPV +RRGT+ G SE KMF G
Sbjct: 86 ILDYDRPTVSPVEERRGTNFLAGLSEEQTKMFSG 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,000,154
Number of Sequences: 27780
Number of extensions: 416026
Number of successful extensions: 1280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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