Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_C07
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    35   0.076
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   5.0  
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878     28   8.7  

>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 35.1 bits (77), Expect = 0.076
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 106 TKHKLSSQRPEDFMDEEDRGEF 171
           TKHKLS Q PED ++EED  E+
Sbjct: 80  TKHKLSEQEPEDEVEEEDEDEY 101


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +1

Query: 280 PGXGXPXLPGXXXXFXFTKGPGXPXKKXXXXGXPGXXXPPXXPPXXGXP 426
           P    P  P           P  P K     G PG   PP  PP  G P
Sbjct: 213 PASSEPVDPSAASLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPPPGPP 261


>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
          Length = 947

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/65 (27%), Positives = 20/65 (30%)
 Frame = -3

Query: 473 PPPXXXXXPXXLFXXRGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXG 294
           PPP     P  +    G P  G   GG  +PG       F G  G           G  G
Sbjct: 792 PPPQGGFLPRQIGGGSGRPGFGAHGGGLGWPGSGVQTPVF-GAQGGGSGWSGSGVQGGFG 850

Query: 293 FPXPG 279
              PG
Sbjct: 851 VRRPG 855


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,402,437
Number of Sequences: 37544
Number of extensions: 237189
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)