Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C07
(892 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC006108-1|AAH06108.1| 931|Homo sapiens G patch domain containi... 42 0.004
AL834465-1|CAD39124.1| 932|Homo sapiens hypothetical protein pr... 42 0.004
AF434677-1|AAN63596.1| 931|Homo sapiens evolutionarily conserve... 42 0.004
Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen... 31 5.6
Y00724-1|CAA68709.1| 765|Homo sapiens protein ( Human mRNA for ... 31 5.6
J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein. 31 5.6
BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha... 31 5.6
BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha... 31 5.6
AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen... 31 5.6
AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen prot... 31 5.6
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 30 9.8
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 30 9.8
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein. 30 9.8
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 30 9.8
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 30 9.8
>BC006108-1|AAH06108.1| 931|Homo sapiens G patch domain containing
1 protein.
Length = 931
Score = 41.5 bits (93), Expect = 0.004
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 16 FTGGFSCGIHELCWNTXGDGHQPLLKVHV*TKHKLSSQR---PEDFMDEEDRGEFGIAPR 186
F+GGFS G +NT G V ++ + + PEDFMDEED EFGIAP+
Sbjct: 53 FSGGFSAGY----FNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPK 108
Query: 187 SGADAQQF 210
+ F
Sbjct: 109 AIVTTDDF 116
>AL834465-1|CAD39124.1| 932|Homo sapiens hypothetical protein
protein.
Length = 932
Score = 41.5 bits (93), Expect = 0.004
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 16 FTGGFSCGIHELCWNTXGDGHQPLLKVHV*TKHKLSSQR---PEDFMDEEDRGEFGIAPR 186
F+GGFS G +NT G V ++ + + PEDFMDEED EFGIAP+
Sbjct: 54 FSGGFSAGY----FNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPK 109
Query: 187 SGADAQQF 210
+ F
Sbjct: 110 AIVTTDDF 117
>AF434677-1|AAN63596.1| 931|Homo sapiens evolutionarily conserved
G-patch domain containing protein protein.
Length = 931
Score = 41.5 bits (93), Expect = 0.004
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 16 FTGGFSCGIHELCWNTXGDGHQPLLKVHV*TKHKLSSQR---PEDFMDEEDRGEFGIAPR 186
F+GGFS G +NT G V ++ + + PEDFMDEED EFGIAP+
Sbjct: 53 FSGGFSAGY----FNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSEFGIAPK 108
Query: 187 SGADAQQF 210
+ F
Sbjct: 109 AIVTTDDF 116
>Z74616-1|CAA98969.1| 1366|Homo sapiens prepro-alpha2(I) collagen
protein.
Length = 1366
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -3
Query: 440 LFXXRGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
L RG P G G G P G PGP PGN GFP P
Sbjct: 446 LMGPRGLPGSPGNIGPAGKEG-PVGLPGIDGRPGPIGPAGARGEPGNIGFPGP 497
>Y00724-1|CAA68709.1| 765|Homo sapiens protein ( Human mRNA for
prepro-alpha2(I) collagen (COL1A2). ).
Length = 765
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -3
Query: 440 LFXXRGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
L RG P G G G P G PGP PGN GFP P
Sbjct: 446 LMGPRGLPGSPGNIGPAGKEG-PVGLPGIDGRPGPIGPAGARGEPGNIGFPGP 497
>J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein.
Length = 1366
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -3
Query: 440 LFXXRGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
L RG P G G G P G PGP PGN GFP P
Sbjct: 446 LMGPRGLPGSPGNIGPAGKEG-PVGLPGIDGRPGPIGPVGARGEPGNIGFPGP 497
>BC054498-1|AAH54498.1| 1366|Homo sapiens collagen, type I, alpha 2
protein.
Length = 1366
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -3
Query: 440 LFXXRGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
L RG P G G G P G PGP PGN GFP P
Sbjct: 446 LMGPRGLPGSPGNIGPAGKEG-PVGLPGIDGRPGPIGPAGARGEPGNIGFPGP 497
>BC042586-1|AAH42586.1| 1366|Homo sapiens collagen, type I, alpha 2
protein.
Length = 1366
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -3
Query: 440 LFXXRGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
L RG P G G G P G PGP PGN GFP P
Sbjct: 446 LMGPRGLPGSPGNIGPAGKEG-PVGLPGIDGRPGPIGPAGARGEPGNIGFPGP 497
>AF004877-1|AAB93981.1| 1366|Homo sapiens pro-alpha 2(I) collagen
protein.
Length = 1366
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -3
Query: 440 LFXXRGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
L RG P G G G P G PGP PGN GFP P
Sbjct: 446 LMGPRGLPGSPGNIGPAGKEG-PVGLPGIDGRPGPIGPVGARGEPGNIGFPGP 497
>AC002528-1|AAB69977.1| 1186|Homo sapiens alpha2(I) collagen
protein.
Length = 1186
Score = 31.1 bits (67), Expect = 5.6
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = -3
Query: 440 LFXXRGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
L RG P G G G P G PGP PGN GFP P
Sbjct: 266 LMGPRGLPGSPGNIGPAGKEG-PVGLPGIDGRPGPIGPAGARGEPGNIGFPGP 317
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 30.3 bits (65), Expect = 9.8
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 428 RGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
RG P G G PG P G PGP PG GFP P
Sbjct: 389 RGMPGSPGGPGSDGKPGPPGSQGE-SGRPGPPGPSGPRGQPGVMGFPGP 436
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
collagen protein.
Length = 1466
Score = 30.3 bits (65), Expect = 9.8
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 428 RGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
RG P G G PG P G PGP PG GFP P
Sbjct: 536 RGMPGSPGGPGSDGKPGPPGSQGE-SGRPGPPGPSGPRGQPGVMGFPGP 583
>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
Length = 1163
Score = 30.3 bits (65), Expect = 9.8
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 428 RGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
RG P G G PG P G PGP PG GFP P
Sbjct: 536 RGMPGSPGGPGSDGKPGPPGSQGE-SGRPGPPGPSGPRGQPGVMGFPGP 583
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 30.3 bits (65), Expect = 9.8
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 428 RGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
RG P G G PG P G PGP PG GFP P
Sbjct: 536 RGMPGSPGGPGSDGKPGPPGSQGE-SGRPGPPGPSGPRGQPGVMGFPGP 583
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 30.3 bits (65), Expect = 9.8
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -3
Query: 428 RGXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFPXP 282
RG P G G PG P G PGP PG GFP P
Sbjct: 536 RGMPGSPGGPGSDGKPGPPGSQGE-SGRPGPPGPSGPRGQPGVMGFPGP 583
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,794,696
Number of Sequences: 237096
Number of extensions: 1518237
Number of successful extensions: 3956
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3782
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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