Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_C07
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    30   2.6  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    28   7.8  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    28   7.8  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    28   7.8  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    28   7.8  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    28   7.8  

>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +1

Query: 16  FTGGFSCGIHELCWNTXGDGHQPLLKVHV*TKHKLSSQ---RPEDFMDEEDRGEFGIAPR 186
           FTGGFS G     WNT G     + +V   ++++   Q   R EDFMD ED GE+GI  R
Sbjct: 48  FTGGFSAGY----WNTVGSKQGWVPQVFSSSRNERGEQIKQRAEDFMDAEDLGEYGIGNR 103

Query: 187 S 189
           S
Sbjct: 104 S 104


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = -3

Query: 425 GXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFP-XPGXLV 270
           G P   G  GG   PG P       G PGP         PGN G P  PG ++
Sbjct: 204 GEPGAPGTPGGNALPGPP-------GPPGPQGPPGADGLPGNPGAPGVPGQVI 249


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +1

Query: 289 GXPXLPGXXXXFXFTKGPGXPXKKXXXXGXPGXXXPPXXPPXXGXPRXXNN 441
           G P  PG         GPG P         PG   PP  P   G P    N
Sbjct: 205 GPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQGPPGPPGPAGPPGPAGN 255


>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1759

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -3

Query: 425 GXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFP 288
           G P   G  G    PG P    F  G PGP         PGN G P
Sbjct: 341 GYPGRDGPKGNSGPPGPPGGGTFNDGAPGP---PGLPGRPGNPGPP 383


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
           protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -3

Query: 425 GXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFP 288
           G P   G  G    PG P    F  G PGP         PGN G P
Sbjct: 340 GYPGRDGPKGNSGPPGPPGGGTFNDGAPGP---PGLPGRPGNPGPP 382


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
           isoform a protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -3

Query: 425 GXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFP 288
           G P   G  G    PG P    F  G PGP         PGN G P
Sbjct: 340 GYPGRDGPKGNSGPPGPPGGGTFNDGAPGP---PGLPGRPGNPGPP 382


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
           isoform b protein.
          Length = 1759

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -3

Query: 425 GXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFP 288
           G P   G  G    PG P    F  G PGP         PGN G P
Sbjct: 341 GYPGRDGPKGNSGPPGPPGGGTFNDGAPGP---PGLPGRPGNPGPP 383


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
           collagen protein.
          Length = 1795

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = -3

Query: 425 GXPXXGGXXGGXXFPGXPXXXXFFXGXPGPXVXXKXXXXPGNXGFP 288
           G P   G  G    PG P    F  G PGP         PGN G P
Sbjct: 377 GYPGRDGPKGNSGPPGPPGGGTFNDGAPGP---PGLPGRPGNPGPP 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,973,912
Number of Sequences: 27780
Number of extensions: 206687
Number of successful extensions: 846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)