Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C03
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 35 0.016
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.0
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 28 1.4
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 27 2.4
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.1
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 3.1
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.1
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 26 7.2
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.2
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.5
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 25 9.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 9.5
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 34.7 bits (76), Expect = 0.016
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +3
Query: 522 YASSHPPLAISATSTRSSNPEFHTPTTPDLTSISINPLNAVLKXVRARGL-SLR---WSS 689
Y SS IS +ST N FH PT TS S A K V + + SL SS
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSS 854
Query: 690 XAPSAYFTPLVT 725
+AY T VT
Sbjct: 855 VTSTAYTTDSVT 866
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.0
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 277 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 447
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 448 DVTVEGVNVLATPSSS 495
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +2
Query: 533 PPSPGDLGYINPIIKSRIPYTNHPRLNIHFHQSPERRTKXSSRPGFKPPLVIXGSISVFH 712
PP PGD+ + NP++ + P +F +PE S+ G IS+ H
Sbjct: 218 PPQPGDIVFSNPMLGGPDHKVSQPSETENFLPTPEPPKIASANAGSS------NEISIPH 271
Query: 713 PPRHWGMAKG 742
RH KG
Sbjct: 272 YQRHKKSHKG 281
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 561 STRSSNPEFHTPTTPDLTSISINPLNAVLKXVRARGLSLRWSSXAPS 701
S R+ +P+F +P ++S + NP A L ++ L+ + PS
Sbjct: 196 SNRNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCKLKSHNSLPS 242
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 405
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 259 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 372
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 528 SSHPPLAISATSTRSSNPEFHTPTTPDLTSIS 623
+S PP ++S+ FHTPT P T +S
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLS 151
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 340 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSFKPPQTD 111
W D+F + +P+ ++A IPSL A K P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 509 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 375
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +1
Query: 277 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 456
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 457 VEGVNVLATP 486
V +TP
Sbjct: 540 YTSTPVTSTP 549
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Frame = +2
Query: 572 IKSRIPYTNHPRLNIHFHQSPERRTKXSSRPGFKPPL----VIXGSISVFHPPRHW 727
IK I HP+L+I P SS F PL V IS +H P HW
Sbjct: 815 IKCIITSITHPKLDIAESLEPLSCIPSSSLTNFTQPLVPFSVSRDPISFYH-PLHW 869
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 522 YASSHPPLAISATSTRSSNPEFHTPT 599
YA +HP L I A +T + E + PT
Sbjct: 80 YAKTHPDLCILAVNTFVKDSEEYNPT 105
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 537 PPLAISATSTRSSNPEFHTPTTPDLTSISINPLNAVLKXVRARGLSLRWSSXAPSAYF 710
P L + + T+S +P TPT+ S+ +P + V K V +R SLR S S F
Sbjct: 331 PKLTRTPSLTKSLDPG--TPTSLKSPSLRKSPSSFVQKDVYSRSNSLRISQANRSNVF 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,591
Number of Sequences: 5004
Number of extensions: 66660
Number of successful extensions: 241
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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