Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_C01
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   4.1  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   5.5  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.2  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   7.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   7.2  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   9.6  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 340  RGATDASRLRPAPVSWP*C 396
            RGAT    +RP P+ WP C
Sbjct: 955  RGATSIVSVRPDPLFWPTC 973


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 138 NASRFCVSSLRRGHAN 91
           +ASRFCV SL+R  AN
Sbjct: 579 SASRFCVESLKRQKAN 594


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 225 YAWEERIEEAREDPSSVSLHRLCRQLSNRPAP-TCPLVDE 341
           Y+W    + A E PS  +  ++  +++ +P P   PL D+
Sbjct: 27  YSWSSSTDSAGEIPSLPTNRKILEKIAEKPPPFESPLEDD 66


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 480 VGLXRSXPPIGGMRPLRVQSRWERTAAPALRPGHRRGPEPRSIGCPSRP 334
           V L  S  P   + PL  Q +     +P+L P  +   +P S+   S+P
Sbjct: 50  VSLPPSHLPRSTLHPLLSQQQQPAQQSPSLGPAQQNIQQPPSVSIASQP 98


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 223 AMRGRNGSRRPVRTPRPCPSTDFAASS 303
           A  GR  SRRP  +P P PS     +S
Sbjct: 178 AFNGRKVSRRPSSSPPPIPSIPHETTS 204


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 170 ALDPGTTKKCGTLHDFACHPC 108
           +LDP T ++  TL DF C  C
Sbjct: 589 SLDPLTIERIATLQDFNCSVC 609


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
 Frame = -2

Query: 436 SEGAESLGANCRSSITARTPARA*--------AEKHRLPLSSTSGQVGAGRFESWRQSRW 281
           S    S+ AN  SS+T+ +  +          A K  LP +ST  +     FE+   + W
Sbjct: 271 SNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSFFETPHNNIW 330

Query: 280 RDTDEG 263
              D G
Sbjct: 331 DSRDRG 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,751
Number of Sequences: 5004
Number of extensions: 47471
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)