Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_C01
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 30 2.2
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 30 2.2
Z92827-9|CAB54200.1| 510|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81565-4|CAB04582.3| 511|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z54269-6|CAB54208.1| 510|Caenorhabditis elegans Hypothetical pr... 29 5.2
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 29 5.2
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 165 KRELNELEAEMAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSN 308
K+E NELE MAA +SS R + ++E R + S+ + SN
Sbjct: 608 KQEENELELVMAASLSSMRSHDILAKLEAMRNAQNGNSVQNIGNSQSN 655
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 165 KRELNELEAEMAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSN 308
K+E NELE MAA +SS R + ++E R + S+ + SN
Sbjct: 608 KQEENELELVMAASLSSMRSHDILAKLEAMRNAQNGNSVQNIGNSQSN 655
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 165 KRELNELEAEMAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSN 308
K+E NELE MAA +SS R + ++E R + S+ + SN
Sbjct: 124 KQEENELELVMAASLSSMRSHDILAKLEAMRNAQNGNSVQNIGNSQSN 171
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 165 KRELNELEAEMAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSN 308
K+E NELE MAA +SS R + ++E R + S+ + SN
Sbjct: 124 KQEENELELVMAASLSSMRSHDILAKLEAMRNAQNGNSVQNIGNSQSN 171
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 165 KRELNELEAEMAAKISSYRGYAWEERIEEAREDPSSVSLHRLCRQLSN 308
K+E NELE MAA +SS R + ++E R + S+ + SN
Sbjct: 608 KQEENELELVMAASLSSMRSHDILAKLEAMRNAQNGNSVQNIGNSQSN 655
>Z92827-9|CAB54200.1| 510|Caenorhabditis elegans Hypothetical
protein F02C12.5c protein.
Length = 510
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 362 GSGPRRCPGRNAGAAVRSQRLCTLRGRIPPIGGXERXKPTLLPGAT 499
G+GPR+C G G + L L R + G E K + G T
Sbjct: 450 GAGPRQCVGMRLGLSEAKTALAHLLRRYDLVAGVETEKELNILGCT 495
>Z81565-4|CAB04582.3| 511|Caenorhabditis elegans Hypothetical
protein K06G5.2 protein.
Length = 511
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 362 GSGPRRCPGRNAGAAVRSQRLCTLRGRIPPIGGXERXKPTLLPGAT 499
G+GPR+C G G + L L R + G + K L G T
Sbjct: 451 GAGPRQCVGMRLGLSEAKTALAHLLRRFSILAGPKTEKELHLQGCT 496
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 658 PXLSPGXXPANXGXRXXXXPPXXHPGXDXAXPPXXLRSPP 777
P P PA G R PP PG A PP +R PP
Sbjct: 763 PSPVPRPAPAPPGGRQAPMPPRGGPG---APPPPGMRPPP 799
>Z54269-6|CAB54208.1| 510|Caenorhabditis elegans Hypothetical
protein F02C12.5c protein.
Length = 510
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 362 GSGPRRCPGRNAGAAVRSQRLCTLRGRIPPIGGXERXKPTLLPGAT 499
G+GPR+C G G + L L R + G E K + G T
Sbjct: 450 GAGPRQCVGMRLGLSEAKTALAHLLRRYDLVAGVETEKELNILGCT 495
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 658 PXLSPGXXPANXGXRXXXXPPXXHPGXDXAXPPXXLRSPP 777
P P PA G R PP PG A PP +R PP
Sbjct: 763 PSPVPRPAPAPPGGRQAPMPPRGGPG---APPPPGMRPPP 799
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,483
Number of Sequences: 27780
Number of extensions: 320802
Number of successful extensions: 899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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