Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B17
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.2  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.2  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 338 LAPKIPKRGXGKFNAPGDFKNPGPXP 261
           L  + PK   GK NAP  F  PG  P
Sbjct: 731 LRKRFPKSWIGKLNAPVLFTGPGNIP 756


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -3

Query: 111 WRALFLFLFHNKHFTR-GFVQVTSARPSR 28
           WR  +L +  NKH T  G  Q+    P R
Sbjct: 291 WRKAYLIIQENKHLTESGLSQIKKPHPYR 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,747
Number of Sequences: 5004
Number of extensions: 31247
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)