Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B13
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    57   2e-08
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    54   2e-07
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   5.1  
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    28   6.7  
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252...    28   8.9  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 26/49 (53%), Positives = 33/49 (67%)
 Frame = +3

Query: 75  ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADG 221
           ++A   G    L+  E+DV  MLAA  HLG +N +FQME YVYKRR+DG
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDG 49


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +3

Query: 108 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADG 221
           L+  E+D+  MLAA  HLG +N +FQME YVYKRR DG
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDG 49


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 175  TFSAPRWVVAASILVTSSSLRASTSNP 95
            TF A RWV+AA   V  + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 27  VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 197
           V F ++W   +    +   T + G   L   +ED+ K L+A  H   E +   MET+
Sbjct: 240 VPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296


>03_05_0357 -
           23424234-23424567,23424796-23424923,23425024-23425205,
           23425255-23425504
          Length = 297

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 236 QPCRSLPWGKKTLVXGLXPVPWS--VNPXP 319
           +PCRSLPW    L   L PV W+  V+P P
Sbjct: 225 RPCRSLPWLFSLL--PLRPVTWAAKVHPVP 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,634,104
Number of Sequences: 37544
Number of extensions: 180523
Number of successful extensions: 337
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)