Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B11
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.083
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.083
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPPPP 560
           PPPPPPP       PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPPPP 560
           PPPPPPP        PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP 26



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPPPP 560
           PPPPPP        PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPPPP 560
           PPPPPPP       PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778



 Score = 32.3 bits (70), Expect = 0.083
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPPPP 560
           PPPPPPP       PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPPPP 560
           PPPPPP        PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPPPP 560
           P PPP P       PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPP 566
           PPPPPPP       PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 612 PPPPPPPXXXXXXXPPPP 559
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 613 PPPPPPPXXXXXXXPPPPXL 554
           PPPPPP        P PP +
Sbjct: 5   PPPPPPAPAPAAAAPAPPLM 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,026
Number of Sequences: 5004
Number of extensions: 21644
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)