Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B11
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 612  PPPPPPP 592
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 612  PPPPPPP 592
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
 Frame = +1

Query: 523 GGGGGXGXXXIXXG--GGGXXXXXXXGGGGGG 612
           GG G      +  G  GG        GGGGGG
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +1

Query: 517 LXGGGGGXGXXXIXXGGGGXXXXXXXGGGGGG 612
           L G G       +    GG        GGGGG
Sbjct: 19  LGGPGSSSAGGVVTGASGGSIVVGANNGGGGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,462
Number of Sequences: 438
Number of extensions: 4612
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)