Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B07
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   4.1  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   5.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   9.5  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   9.5  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 189 LTTRKLAERLGVQQPALYWHFRNKR 263
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 626  VQLCHTTEVRFLHKDPKXAV-FPVTTL*ND 540
            + LCH   +  L  DPK AV FP  ++ ND
Sbjct: 1109 IALCHNKGIDVLRLDPKLAVGFPSPSVLND 1138


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 353 DRECPQLQAGAARLPPAQWHHVLELQVAAALXYPSRGPSL--RVPSFLVQSGPYSES 517
           D+  P LQ   ++LP  QW  ++ L+   A   P   P +  + P FL      SE+
Sbjct: 699 DQLDPNLQT-LSKLPRTQWQTLINLEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEA 754


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 293 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQ 204
           H F Q   +   +P++P    ++NP P R+
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRR 325


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 233 RLLNPQPFRQFACRQTVYADLVQQVQGGTDHCIRL 129
           R+L+P     F+      AD      GG+D CIRL
Sbjct: 230 RILSPIRSHDFSIETITRADSDSLYVGGSDGCIRL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,081
Number of Sequences: 5004
Number of extensions: 47264
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)