Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B06
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.8  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    25   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 128 PKFXGPPXXXNPPXPKXXXGXFPPPPP 208
           P   GPP    PP P    G  PPPPP
Sbjct: 756 PIMGGPPP---PPPPPGVAGAGPPPPP 779



 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +2

Query: 437 PPXGXXPPXPXXFFXXXXAPXPXXGGXXXXPPPXXXGEKXXXPPRXP 577
           PP     P P         P P  GG    PPP         PP  P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 143  PPXXXNPPXPKXXXGXFPPPPP 208
            PP    PP PK   G  P PPP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPP 1213


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +1

Query: 439 PPGXXPPXPPX--FFXXXXXPPPXXXG 513
           PPG  PP PP   F      PPP   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 173 LGGGGXFXXGAPGIWVFS 120
           LGGGG F  G PG  ++S
Sbjct: 313 LGGGGSFSAGGPGKGMYS 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.147    0.508 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,837
Number of Sequences: 5004
Number of extensions: 18676
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)