Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B05
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.046
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.061
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect(2) = 0.046
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 709 PPPPXXXXFFFFXXPPPPPXP 771
           PPPP    F     PPPPP P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 24.2 bits (50), Expect(2) = 0.046
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 571 GXXXPPPPPPXF 606
           G   PPPPPP F
Sbjct: 7   GNPPPPPPPPGF 18


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect(2) = 0.061
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 709 PPPPXXXXFFFFXXPPPPPXPXKXRGGG 792
           PPPP          PPPPP P     GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 532 GGXXXPPXXKKKXGXXXPPPPPP 600
           GG   PP      G   PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 709 PPPPXXXXFFFFXXPPPPPXPXKXRGGGG 795
           PPPP          PPPPP P      GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 21.8 bits (44), Expect(2) = 0.061
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 547 PPXXKKKXGXXXPPPPP 597
           PP      G   PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 743 FXXPPPPPXPXKXGGGG 793
           F  PPPPP P     GG
Sbjct: 944 FPPPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,018
Number of Sequences: 5004
Number of extensions: 19217
Number of successful extensions: 219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)