Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B04
         (1073 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.091
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   1.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.091
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 513 PPPPXXGGGPPXXKXGGGGGXXPPPP 436
           PP P  GG PP     G  G  PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 30.7 bits (66), Expect = 0.37
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 440 GGGXXPPPPPXFXXGGPPP 496
           GG   PPPPP     GPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 437 GGGGXXPPPPPXFXXGGPPP 496
           G G   PPPP  F  G PPP
Sbjct: 123 GVGYTAPPPPAGFGRGAPPP 142


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 525 GXXXPPPPXXGGGPPXXKXGGGGGXXPPPPXRXXKKKK 412
           G   PPPP  G  PP           PPPP    KK+K
Sbjct: 7   GNPPPPPPPPGFEPP-------SQPPPPPPPGYVKKRK 37


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -3

Query: 513 PPPPXXGGGPPXXKXGGGGGXXPPPP 436
           PPP     G P    G      PPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPP 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,380
Number of Sequences: 5004
Number of extensions: 15368
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)