Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B03
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   206   2e-55
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   206   2e-55
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.16 

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  206 bits (503), Expect = 2e-55
 Identities = 95/112 (84%), Positives = 104/112 (92%)
 Frame = +3

Query: 237 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 416
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 417 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQXL 572
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQ L
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112



 Score = 73.3 bits (172), Expect = 2e-15
 Identities = 39/71 (54%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +1

Query: 568 FWRYFXXXXXXXXXXXXTSLCFVYPLEL-RTYPVLXADVGKGXGXREFSGLGNWIXXIFK 744
           F RYF            TSLCFVYPL+  RT   L ADVGK  G REF+GLGN +  IFK
Sbjct: 111 FLRYFVGNLASGGAAGATSLCFVYPLDFARTR--LAADVGKAGGEREFTGLGNCLTKIFK 168

Query: 745 SDGLIGLYXGF 777
           +DG+ GLY GF
Sbjct: 169 ADGITGLYRGF 179



 Score = 28.7 bits (61), Expect = 0.068
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 264 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 443
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 444 LSFWRGNFANVIRYFPTQALNFAFKD 521
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 324 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 482
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  206 bits (503), Expect = 2e-55
 Identities = 95/112 (84%), Positives = 104/112 (92%)
 Frame = +3

Query: 237 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 416
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 417 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQXL 572
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQ L
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112



 Score = 73.3 bits (172), Expect = 2e-15
 Identities = 39/71 (54%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
 Frame = +1

Query: 568 FWRYFXXXXXXXXXXXXTSLCFVYPLEL-RTYPVLXADVGKGXGXREFSGLGNWIXXIFK 744
           F RYF            TSLCFVYPL+  RT   L ADVGK  G REF+GLGN +  IFK
Sbjct: 111 FLRYFVGNLASGGAAGATSLCFVYPLDFARTR--LAADVGKAGGEREFTGLGNCLTKIFK 168

Query: 745 SDGLIGLYXGF 777
           +DG+ GLY GF
Sbjct: 169 ADGITGLYRGF 179



 Score = 28.7 bits (61), Expect = 0.068
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 264 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 443
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 444 LSFWRGNFANVIRYFPTQALNFAFKD 521
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 324 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 482
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 658 TCEVQGGTRSTERWPRRHHRRPDYQRSNARXC 563
           TC+V G T ST+   +RH  +  +Q  N+  C
Sbjct: 373 TCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVC 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,674
Number of Sequences: 438
Number of extensions: 3860
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)