Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP11_FL5_B02
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 137 2e-33
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 48 2e-06
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 34 0.029
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 32 0.089
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.27
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe... 30 0.36
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 29 0.63
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.83
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.83
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 1.9
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 28 1.9
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 4.4
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 4.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.4
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 5.9
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.9
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.9
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 7.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.8
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 137 bits (331), Expect = 2e-33
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%)
Frame = +3
Query: 27 RNYIMSKEKSESVNGDSSTVAEQNGEKRIGCAHYKRRAKFVTPCCNKVYICRYCHDENEQ 206
R + ++++ + D ++ +GC+HY R K C++ Y CR+CH++
Sbjct: 112 RTHKKESDENQLSSSDLEKTYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACD 171
Query: 207 HYFNRKTVTELICTECDTRQKVQPECQNCGVRFGKYTCLICNLFDDE-DKKQYHCDGCGI 383
H R V ++C C Q C+ C G+Y C C L+DD+ +K YHCD CGI
Sbjct: 172 HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGI 231
Query: 384 CRVGG--RDXFFHCERCNMCLPVXLQRVGHXCVXNVSRSNCPVCLEDIHTSRIPCHIPDC 557
CR+G D +FHC+ C +CLP+ + H C+ + NCP+C E + SR C
Sbjct: 232 CRIGRGLGDDYFHCKTCGLCLPISVFNT-HRCIERSTDCNCPICGEYMFNSRERVIFLSC 290
Query: 558 GHLLXRPCFXQLLHSGH 608
H L + C + + + +
Sbjct: 291 SHPLHQRCHEEYIRTNY 307
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 48.0 bits (109), Expect = 2e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +3
Query: 45 KEKSESVNGDSSTVAEQNGEKRIGCAHYKRRAK-FVTPCCNKVYICRYCHDENEQHYFNR 221
K++ +++N NG C HYK+ + F CC++VY C CHD ++ H F
Sbjct: 309 KKQKQNLNITKGLPLPNNG----ACEHYKKSFRWFRFSCCDRVYPCDECHDADQNHTFEH 364
Query: 222 KTVTELICTEC--DTRQKVQPECQNCG 296
+IC C ++ K C +CG
Sbjct: 365 --ANRIICGYCAMESFYKKDATCPHCG 389
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 33.9 bits (74), Expect = 0.029
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +3
Query: 117 CAHYKRRAKFVT-PC--CNKVYICRYCHDENEQHYFN--RKTVTELICTEC 254
C HY +A V C C K Y C CHDE H F RK + C C
Sbjct: 23 CFHYHSKADVVALRCGQCEKFYACFQCHDELNTHPFLPWRKAKFHIPCVIC 73
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 32.3 bits (70), Expect = 0.089
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 117 CAHY-KRRAKFVTPCCNKVYICRYCHDENEQHYFNRKTVTELICTECDTRQKVQ 275
C H + T CC + C CH+E H + + LIC +C ++Q
Sbjct: 2 CKHVLNAQVSIRTACCRRWIDCIECHNEIADHPLLKTSELTLICKKCRKAFRIQ 55
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.27
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 704 PXPXPXXXPXXXPXPPPXXXXXXXXPPPXXXXPXXXPXXPXXXAPXPPP 850
P P P P PP PP P P P AP P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +2
Query: 704 PXPXPXXXPXXXPXPPPXXXXXXXXPPPXXXXPXXXPXXPXXXAPXPPP 850
P P P P PP PP P P P P PP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/47 (27%), Positives = 15/47 (31%)
Frame = +3
Query: 612 PAPXPTLXXXXXHSTPTXXRVXPXXXXXXXXPXPXPXXXPXXPPXPP 752
P+ P+L S P P P P P PP PP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 460
Score = 30.3 bits (65), Expect = 0.36
Identities = 20/68 (29%), Positives = 39/68 (57%)
Frame = +1
Query: 118 VLITNGERSL*LHAVTKCTSAVTVMMKTNNTISIGRLLQS*YAPSVTQDKRCSQNARTVE 297
VL+ E ++ L ++ T+ +T+ +NTIS RLLQ+ ++ DKR ++ ++
Sbjct: 133 VLLREIEETIPLINLSLTTAGITLNTALSNTISPSRLLQAQCFLELS-DKRFEESHTEIQ 191
Query: 298 LGLESTLV 321
+G + T+V
Sbjct: 192 IGPKFTVV 199
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 165 KVYICRYCHDENEQHYFNRKTVTELICTECDTRQKVQPECQNCG 296
K ICR+CH + +F + E + + K+ CQ CG
Sbjct: 666 KTPICRWCHSKRSSEWFVAPPIEE---SSPKDKSKIVALCQRCG 706
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 29.1 bits (62), Expect = 0.83
Identities = 17/71 (23%), Positives = 25/71 (35%)
Frame = +3
Query: 450 LQRVGHXCVXNVSRSNCPVCLEDIHTSRIPCHIPDCGHLLXRPCFXQLLHSGHYPAPXPT 629
L++ G + + C VCL + + + C H R C Q L S P
Sbjct: 509 LEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCR 568
Query: 630 LXXXXXHSTPT 662
STP+
Sbjct: 569 TKGVASASTPS 579
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 0.83
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 850 GXXGGGRXXGXXGXXXGXGXXRXGAXXXXXXXGGGXGGXXGXXXGXG 710
G GGR G G R GA GG GG G G G
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -1
Query: 850 GXXGGGRXXGXXGXXXGXGXXRXGAXXXXXXXGGGXGGXXGXXXG 716
G GGGR G G R G GG GG G G
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 849 GGGXGAXXXGXXGXXXGXXXXGGGXXXXXXXXGGGXGXXXGXXXGXG 709
GGG G G G G GGG GGG G G G G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGG----LGGFGGGPGGFGGGPGGHG 269
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 486 SRSNCPVCLEDIHTSRIPCHIPDCGHLLXRPCFXQLLHSGHYPAP 620
S +C +CLE I + C H + C Q L +G+ P
Sbjct: 762 SADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCP 806
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = +3
Query: 711 PXPXXXPXXPPXPPPXXXXXXXAPXRXXPXPXXXPXXPXXRPPP 842
P P P PP +P P P P P PPP
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 399 RDXFFHCERCNMCLPVXLQRVGHXCVXNVSRSNCPVCLE 515
RD F C C + + +VS+ CP+C+E
Sbjct: 1364 RDSFIDCTICERRFHYDCVGLNNEIADSVSKFTCPICME 1402
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 150 TPCCNKVYICRYCHDENEQHYFNRKTVTELIC 245
TPC + IC Y H NE F T+ C
Sbjct: 115 TPCHTRDSICFYAHSSNEHAVFTGDTLFNAGC 146
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 101 TVLFSNCGTIAVYTF*LFLRHYVVPSLLL 15
T+ F++CG+ A+Y + L ++ P+ LL
Sbjct: 158 TIYFASCGSYAIYACCMALTVFINPNALL 186
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -2
Query: 192 HDSNGRCTLCYSMESQTSLAVCNEHSLCVFHRF 94
HD +C M+ + +C H CVF+ F
Sbjct: 39 HDQFDYSCICRWMDQSLTCPICKRHVDCVFYGF 71
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +2
Query: 716 PXXXPXXXPXPPPXXXXXXXXPPPXXXXPXXXPXXPXXXAPXPP 847
P P P PPP PPP P P P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGG--PPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Frame = +2
Query: 704 PXPXPXXXPXXX---PXPPPXXXXXXXXPPPXXXXPXXXPXXPXXXAPXP 844
P P P P P PPP PPP P AP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 738 PPXPPPXXXXXXXAPXRXXPXPXXXPXXPXXRPPP 842
PP PPP AP P P P PPP
Sbjct: 732 PPPPPPAVIVPTPAP-APIPVPPPAPIMGGPPPPP 765
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/33 (33%), Positives = 11/33 (33%)
Frame = +3
Query: 705 PXPXPXXXPXXPPXPPPXXXXXXXAPXRXXPXP 803
P P P PP PPP P P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 233 CNSLPIEIVLFVFIMTVTADVHFVTAWSH 147
CN IE + F+ TVT+++ F AW++
Sbjct: 105 CNPQSIENAMIPFVNTVTSEISF-DAWAY 132
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 706 PPXXXXXPPXXPXPPPP 756
PP PP P PPPP
Sbjct: 13 PPPPGFEPPSQPPPPPP 29
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 237 LICTECDTRQKVQPECQNCGVRFG--KYTC-LICN--LFDDEDKKQYHCDGCGICR 389
LI + + ++ E QNC G KYT L+ N ++E K Y C GICR
Sbjct: 95 LISNALERLENIELERQNCMREDGLVKYTNELLLNKETLNNEALKLYSCAKAGICR 150
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 233 CNSLPIEIVLFVFIMTVTADVHFVTAWSH 147
CN IE + F+ TVT+++ F AW++
Sbjct: 105 CNPQSIENAMIPFVNTVTSEISF-DAWAY 132
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 233 CNSLPIEIVLFVFIMTVTADVHFVTAWSH 147
CN IE + F+ TVT+++ F AW++
Sbjct: 106 CNPQSIENAMIPFVNTVTSEISF-DAWAY 133
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 421 SQWKNXSRPPTRHMPHPSQ*YCFLSSSSNRLQIKQVYFPNLTP 293
SQ K+ S+PP+ H+P Q S+ + + +V P + P
Sbjct: 119 SQTKSTSQPPSNHLPAFQQIPPIHQSAYPQNNVAEVLMPPIPP 161
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = +3
Query: 669 RVXPXXXXXXXXPXPXPXXXPXXPPXPPPXXXXXXXAPXRXXPXPXXXPXXPXXRPP 839
RV P P P P PP P P P P P P PP
Sbjct: 1010 RVPPVPKLSSKAP-PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,606
Number of Sequences: 5004
Number of extensions: 54715
Number of successful extensions: 240
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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