Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_B01
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0512 - 24460391-24462337                                         29   3.8  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   3.8  
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804...    28   8.7  
03_02_0488 - 8824980-8825267,8825364-8827775                           28   8.7  

>11_06_0512 - 24460391-24462337
          Length = 648

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = +1

Query: 205 TLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-------GCXTWLVSSERLWRP 363
           +L +++   +     +R L DLQ  W + R  +   E+       G   W + + ++W  
Sbjct: 561 SLEIQNGECKVEVLRLRCLKDLQFCWEELRELYPMLEFVEAQHCSGVANWPLDNNKVWTK 620

Query: 364 DVVLLNAAATTAGDYSSPXPC 426
           D    NAA+  + + ++P  C
Sbjct: 621 DAETSNAASAQSEEPTAPDVC 641


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 237 VRVHRADTGRSSNELDRQTTELERRGMGLXHLAGVLGTL 353
           V+ H  +  R S EL+RQ  ELER+G  L    G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>03_02_0815 +
           11477618-11477845,11478206-11478337,11480227-11480408,
           11480500-11480662,11481480-11481794
          Length = 339

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 469 CPXGXMXGGGXVIRYTGAERSSPRRWLQPRLAVPRQ 362
           C  G + GGG      G+   SP R L PR+ VP+Q
Sbjct: 46  CSVGVVGGGGGA----GSPPGSPGRSLSPRMFVPQQ 77


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 421 GAERSSPRRWLQPRLAVPRQASTSVPRTPA 332
           G+ RS  RR L P L  PRQ+STS P  P+
Sbjct: 458 GSRRSPLRRMLDPILK-PRQSSTSGPIQPS 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,444,433
Number of Sequences: 37544
Number of extensions: 368578
Number of successful extensions: 935
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)