Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_A19
         (1295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.27 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.27
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 120 PXXXXPXPRXPPPRXPXAPPXPPRPXPXGXPXXXXGPQXPP 242
           P    P P+  P + P AP     P P   P     P  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
 Frame = +3

Query: 393 GPPPXPR--PXGXGKKXPPXPPXXPPXXXXPAA 485
           GP P P   P    +  PP P   PP    P A
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA 54



 Score = 23.8 bits (49), Expect = 3.3
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 375 PXXPXRGPPPXPRPXGXGKKXPPXPPXXPP 464
           P  P RG PP P         P  PP  PP
Sbjct: 31  PQAPQRGSPPNPSQG----PPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 437 TPXTPXPPPPQXXPXXPN 490
           TP  P PPPP      P+
Sbjct: 337 TPPKPAPPPPPPSSSGPD 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.139    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,356
Number of Sequences: 438
Number of extensions: 7404
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44543373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)