Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP11_FL5_A01
         (1055 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.65 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.0  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   3.5  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    23   3.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.65
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -2

Query: 931 PXXGXPXPXPXXPXXXXGXXXXSPPPXAHXXPXXTPPG 818
           P  G P P P            SPP  +   P   PPG
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 23.0 bits (47), Expect = 4.6
 Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
 Frame = -2

Query: 1054 PXNPPTKXKKXKXP-PKXPPPPXXPPXRXP 968
            P   P   ++   P P   PPP  PP   P
Sbjct: 27   PHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 1015 PPKXPPPPXXPPXRXPPPRKXRK 947
            PPK  PPP  P    P   K  K
Sbjct: 338  PPKPAPPPPPPSSSGPDSAKLDK 360


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 861 PPPXRTKXPXXPPRGPXXPK 802
           P P R   P  P +GP  PK
Sbjct: 27  PQPGRRPFPTFPGQGPFNPK 46


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 861 PPPXRTKXPXXPPRGPXXPK 802
           P P R   P  P +GP  PK
Sbjct: 13  PQPGRRPFPTFPGQGPFNPK 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,999
Number of Sequences: 438
Number of extensions: 8301
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35186292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)