Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_P21
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    30   0.46 
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.7  
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos...    26   7.5  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   9.9  

>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
 Frame = +2

Query: 137  PTKRLPCHSYTRRPILSEVRTRMR*GGYRGQ-HYNQTARLTPRTPSRRSLRGESKALKRQ 313
            P  +L     +R   +S V  R R      +    +T+      P + + R  SK L+  
Sbjct: 830  PQHKLSDQPRSRNNSISNVSHRERSNSVSSKSRETRTSASNESDPKKSTQRDSSKKLENS 889

Query: 314  PSRYGSPSGRPDSAAGVPEYPAGPEPACR 400
                GSPS    S A     P  PEPA +
Sbjct: 890  TVVSGSPSSSSKSDAAKSIKPQKPEPALK 918


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 281 LRGESKALKRQPSRYGSPSGRPDSAA 358
           L   S +  RQP +Y SPSG  +SAA
Sbjct: 608 LNPTSGSFLRQPMQYSSPSGVSESAA 633


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 390 GSGPAGYSGTPAALSGRPDG 331
           G GP G+ G P    G P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246


>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
           Coq4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
 Frame = -1

Query: 127 KFLGPAICSQHLQIV----------ESHIPRAPLLRGDLVGGSAL 23
           KFL P++ S  L+++            H+P +PL R  LV GSA+
Sbjct: 23  KFLKPSVASNQLRLLFTAAERKVNYPGHVPLSPLQRIFLVAGSAI 67


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +2

Query: 224 GQHYNQTARLTPRTPSRRSLRGES-----KALKRQPS-RYGSPSGRPDSAAGVPEY 373
           G+ +  + RL  R+PS    R  S     ++ +R  S RY S S  PD  +  P+Y
Sbjct: 104 GRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDY 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,719
Number of Sequences: 5004
Number of extensions: 39436
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)