Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_P16
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    29   1.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    29   1.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.4  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.8  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   5.8  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   5.8  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   7.7  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 35/161 (21%), Positives = 51/161 (31%), Gaps = 4/161 (2%)
 Frame = -2

Query: 705  TCTEPGXCTCDSGYKNIDDVCVPQCLDCRNGECVAPNDCXCHD--NYAMSNGTCAPVCRR 532
            +CT P   T      +I   C     D     C     C   +  +Y   NG C    + 
Sbjct: 772  SCTLPISYTSTPTTTSISGTCNGATFDASLYVCDGTVLCPIVNGVSYQNCNGACYNPSQY 831

Query: 531  ACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERNDTN 352
             C NGA       +       +P       P  +     +   S     C  +Y   D +
Sbjct: 832  GCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQLCGSNY--YDAS 889

Query: 351  SNVC--YKKCDGACENGRCSLDGACECDSGYILSNGTCIRN 235
            S  C   + C         S +GAC   S Y+ S+G+   N
Sbjct: 890  SYYCDNDQLCPIIDGVDYLSCNGACYNPSQYVCSDGSLSPN 930



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 522  NGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERNDTNSNV 343
            NGAC  P +  C DG  LSP        V + +   +   +P T T       + T++NV
Sbjct: 911  NGACYNPSQYVCSDG-SLSPN------TVTTTKATTTFTPTPTTTTTPTPTTTSATSTNV 963


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 318 CENGRCSLDGACECDSGYILSNGTCIRNNTACSANCS 208
           C+NG C+ DG C    G     G    NN   S N S
Sbjct: 65  CKNGTCAGDGFCNGTGGSASCTGCPALNNRIRSLNAS 101


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 435 CSERCVNSHCSSPNTCTCFKDYERNDTNSNVCYK 334
           C E C N+ C    TC   K    +D     CY+
Sbjct: 331 CGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQ 364


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 681 TCDSGYKNIDDVCVPQCLDCRNGEC 607
           TC+S  K+   +C+ QC  C +  C
Sbjct: 75  TCESCKKHTCAICIRQCHKCESNVC 99


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/69 (23%), Positives = 26/69 (37%)
 Frame = +3

Query: 402 MNSESSRSAQNRPAGRRKDPRDSTGSHRRTCTYRAPSTPHLCRPDGTQGRTCRYSWRNCR 581
           + S +S      P G+RK  RD  G  +   T  +    ++   +  +   C    R   
Sbjct: 650 LRSVASSPLNKEPIGKRKSKRDIFGRQKVLPTGISEGLSNIPAKEAIKTADCHGWMRKRS 709

Query: 582 DRXNHWEPR 608
           DR   W+ R
Sbjct: 710 DRYGVWKSR 718


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -2

Query: 750 IPVECSPRC-ERXVNGTCTEPGXCTCDSGYKNIDDVCVPQCLDCRNGECVAPNDCXCHDN 574
           IP    PR  ++  +   T P   T ++G   + ++    C   RNG C A  +C     
Sbjct: 8   IPKRSDPRLLDQKKSAKSTLPKN-TPENGVSTVKNLQHVPCKFFRNGTCTAGENCP---- 62

Query: 573 YAMSNGTCAPVCRRACTNGACSEPDKC 493
           ++ S  T  P+C +    G C    KC
Sbjct: 63  FSHSLETERPIC-KYFLKGNCKFGPKC 88


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 405 NSESSRSAQNRPAGRRKDPRDSTGSHRRTCTYRAPSTPH 521
           NS S  ++QN    ++    +S G+  ++  Y A STPH
Sbjct: 579 NSNSELASQNPLYAQQAVSMESMGNAIQSSAYSAMSTPH 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,130
Number of Sequences: 5004
Number of extensions: 58681
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)