Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_P10
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.38
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.5
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 30 2.7
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349... 30 2.7
07_03_0846 - 21983581-21986055 29 3.5
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.5
03_05_0183 - 21681673-21682524 29 4.6
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 6.1
09_04_0235 + 15904891-15905218,15906732-15907594 28 8.1
08_02_1485 - 27466761-27467753 28 8.1
01_06_0695 - 31292622-31293317 28 8.1
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.38
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 83 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 211
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 351 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 217
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 29.9 bits (64), Expect = 2.7
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Frame = +2
Query: 35 PGAGLSLNR--SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 208
P AG+ SQ + LPS T RQ++ S S TE P A +K S
Sbjct: 266 PSAGMISTSFSSQREQPLPSETIRQDKPSPRKESNFFTTTEKTPSTPRSRAPTTQKQPSS 325
Query: 209 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRH--NP 382
P+ + R + + K + S T S D + L+ +A H
Sbjct: 326 TFFTPSTTPKIPQRTDTDISSSKDAPYQTKPS--ETTSKEAHDKSHLSGFFKARSHTDET 383
Query: 383 ADGSFAPPAARPST*TKCPKLRFLS 457
A + P T TK PK R +S
Sbjct: 384 ATPTKHSPQEDSKTSTKIPKTRDIS 408
>03_05_0626 +
26233178-26233233,26234083-26234284,26234800-26234968,
26235767-26238768
Length = 1142
Score = 29.9 bits (64), Expect = 2.7
Identities = 24/72 (33%), Positives = 32/72 (44%)
Frame = +2
Query: 233 RRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAA 412
RR E E L K+ LE S S++L S + A + R N + G+ PA+
Sbjct: 730 RREGKNTEAEEELEKAKVLEQQLSEMEE-SVNLTASQQSARSAGQIRGNKS-GALLDPAS 787
Query: 413 RPST*TKCPKLR 448
P T PKLR
Sbjct: 788 SPDTSAHLPKLR 799
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 209 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 358
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 438 GHLVHVLGR-AAGGAKLPSAGLCLNASKAEASLA 340
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 650 SQAFIATLLFDPSMSALPIIAKQNSPS 570
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.7 bits (61), Expect = 6.1
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Frame = +2
Query: 86 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR--RVSR-F 253
S +PR+ R YS R R+ RD+R ++++ S D R P G R R R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGS 202
Query: 254 ECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPS 421
++R K + RGS P R AS +P + PA R S
Sbjct: 203 PRDSRSPKGSPRDTQSPRGSPRDSRSP--RRSASPPNGRNRSPTPNASRSPAPRDS 256
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 209 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 385
++RDP+ G+R + + +++ E RG ++ PD +A L ++
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209
Query: 386 DGSFAPP 406
APP
Sbjct: 210 QEKLAPP 216
>08_02_1485 - 27466761-27467753
Length = 330
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 293 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARP 418
PP + G +S +P A LA++L + NPA P + P
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPPPPPTSKLP 80
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 35 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 169
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,347,844
Number of Sequences: 37544
Number of extensions: 520542
Number of successful extensions: 1548
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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