Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_P10
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 30 1.8
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 30 1.8
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 30 1.8
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 30 1.8
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 30 1.8
L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain pro... 29 4.1
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 28 9.5
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 828 GNHXSNXXYNFQX-AKGKSGL-DPNFSTHRTAKARPIDPLV*R 706
GN Y F+ AK K+GL DP+ S AKAR + P++ R
Sbjct: 2702 GNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDR 2744
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 828 GNHXSNXXYNFQX-AKGKSGL-DPNFSTHRTAKARPIDPLV*R 706
GN Y F+ AK K+GL DP+ S AKAR + P++ R
Sbjct: 3231 GNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDR 3273
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 828 GNHXSNXXYNFQX-AKGKSGL-DPNFSTHRTAKARPIDPLV*R 706
GN Y F+ AK K+GL DP+ S AKAR + P++ R
Sbjct: 2912 GNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDR 2954
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 828 GNHXSNXXYNFQX-AKGKSGL-DPNFSTHRTAKARPIDPLV*R 706
GN Y F+ AK K+GL DP+ S AKAR + P++ R
Sbjct: 2702 GNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDR 2744
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 828 GNHXSNXXYNFQX-AKGKSGL-DPNFSTHRTAKARPIDPLV*R 706
GN Y F+ AK K+GL DP+ S AKAR + P++ R
Sbjct: 3231 GNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDR 3273
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 828 GNHXSNXXYNFQX-AKGKSGL-DPNFSTHRTAKARPIDPLV*R 706
GN Y F+ AK K+GL DP+ S AKAR + P++ R
Sbjct: 2912 GNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDR 2954
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 828 GNHXSNXXYNFQX-AKGKSGL-DPNFSTHRTAKARPIDPLV*R 706
GN Y F+ AK K+GL DP+ S AKAR + P++ R
Sbjct: 2121 GNLKEGSKYEFRIRAKNKAGLGDPSDSASAVAKARNVPPVIDR 2163
>L37867-1|AAA63155.1| 319|Caenorhabditis elegans homeodomain
protein protein.
Length = 319
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 329 LPDSARLASALEAFRHNPADGSFAPPAARPST*TKCPKLRFLS 457
LPD + ++S+L HNP +++ P TK PKL LS
Sbjct: 37 LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/116 (23%), Positives = 48/116 (41%)
Frame = +2
Query: 86 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECET 265
S T R+ER+ R + E + + ++AR + K+ + + + G R E
Sbjct: 1217 SITAREERRIQQAEEMFRRQEE---EGKRKEARRRSKSVTPGVLEAAGTAAREDAPEAS- 1272
Query: 266 RLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFAPPAARPST*TK 433
+ + PP SR S + P ++ A+ E N S PP + P++ K
Sbjct: 1273 --IPAPAPSPPASRRSVSRTTQPSTSSFATPTEPPAKNKRMRSVVPPKSEPASSAK 1326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,958,317
Number of Sequences: 27780
Number of extensions: 406613
Number of successful extensions: 1156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -