Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_P06
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    29   0.86 
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   6.1  

>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +3

Query: 609 LESGGWIGPGVFYGGQNS---VDGVSRRSDGSLNELCLYRPPTVHAYRPFASMGRSCYHI 779
           L  GGW+ P ++Y G++S   V G+       +     Y+            M +S YH 
Sbjct: 103 LPYGGWVAPNIYYMGRSSVINVGGLRIAGISGIYSAMDYKKGRYEGLPYNYKMLKSIYHT 162

Query: 780 LESXV-XFGAKTNPIDVNXGGTW 845
            E  V    +   PID+     W
Sbjct: 163 REFDVLSLKSLQKPIDIFLSHDW 185


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 319 LTTRKLAERLGVQQPALYWHFRNKR 245
           +  +KLAE LG+ QP + WH    R
Sbjct: 210 MVQQKLAEELGLLQPEIAWHTERDR 234


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 613 SPEAGSVPVSSMEVKTAWMASPGDLTVH*TSSAYIDLPPYTP 738
           S    S+P +S EVKTA  +S  ++    TSS       YTP
Sbjct: 709 SSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTP 750


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +2

Query: 266 VKRRLLNPQPFRQFACRQTVYADLVQQVQGRHGSLYSAATLSCL 397
           + +  + P  F+ F+  +T+Y +L   +     + +  AT SC+
Sbjct: 703 ISKLSIQPPTFQLFSTLETIYLELKDSMPPNEAADWMIATTSCM 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,487,155
Number of Sequences: 5004
Number of extensions: 69479
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)