Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_O24
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 37 0.019
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.40
12_02_1174 - 26696869-26698191 31 1.2
07_01_0479 + 3606663-3607448 29 3.7
04_03_0958 - 21241230-21241327,21241693-21241893,21241989-212421... 29 3.7
11_06_0610 - 25449085-25453284 29 6.5
04_03_0969 + 21331989-21332674,21333090-21333194,21333269-213333... 29 6.5
12_02_0299 - 17051570-17052474,17053542-17053755 28 8.6
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 8.6
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 37.1 bits (82), Expect = 0.019
Identities = 37/124 (29%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Frame = +1
Query: 352 GAGGXGGXRXLAVGNXNXGGXPXXPRXXGXWPXA-XXXRGRGRXGXXAXXXXGAAXXXXX 528
GAGG GG R A G GG P G A G GR G G
Sbjct: 123 GAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGG----G 178
Query: 529 GXXPGPSQRXXXGXGGXXAXXGXRVNXTLHAXGECGRGXXAXGXREGXIXRXGGGGTXXR 708
G PG + G GG G G G G G E I GGGG +
Sbjct: 179 GGGPGRAPGGGGGGGGPGRAPGGG-----GGGGGLGGGGGEGGAPERVIGGGGGGGGALK 233
Query: 709 VAXG 720
G
Sbjct: 234 CVVG 237
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.7 bits (71), Expect = 0.40
Identities = 30/126 (23%), Positives = 36/126 (28%), Gaps = 5/126 (3%)
Frame = -3
Query: 719 PXATRXXVPPPPXLXMX---PSRXPXAXXPRPHS-PXAWXVXFTRXPXXAXXPPXPXXXR 552
P VPPPP + P+ P PR S ++ P PP P R
Sbjct: 643 PSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702
Query: 551 WXGPG-XXPXXXFXAAPXXXXAXXPXLPRPRXXXAXGHXPXXRGXXGXPPXFXFPTARXR 375
GPG P + P P P R PP +
Sbjct: 703 TNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAP 762
Query: 374 XPPXPP 357
PP PP
Sbjct: 763 APPPPP 768
Score = 30.7 bits (66), Expect = 1.6
Identities = 27/119 (22%), Positives = 33/119 (27%), Gaps = 6/119 (5%)
Frame = -3
Query: 695 PPPPXLXMXPSRX------PXAXXPRPHSPXAWXVXFTRXPXXAXXPPXPXXXRWXGPGX 534
PPPP + P+ P A P P P A P PP P P
Sbjct: 690 PPPPPPPLPPANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPA 749
Query: 533 XPXXXFXAAPXXXXAXXPXLPRPRXXXAXGHXPXXRGXXGXPPXFXFPTARXRXPPXPP 357
P P P+ P G G P P+++ P PP
Sbjct: 750 PPPPPLMTGKKAPAPPPPPPQAPKPPGTVPPPPPLHGASGRPHP---PSSKGLNAPAPP 805
Score = 29.1 bits (62), Expect = 4.9
Identities = 32/126 (25%), Positives = 36/126 (28%), Gaps = 3/126 (2%)
Frame = -3
Query: 719 PXATRXXVPPPPXLXMXPSRXPXAXXPRPHSPXAWXVXFTRXPXXAXXPPXPXXXRWXGP 540
P T PPPP PS A P P P + + PP P P
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPP-----P 591
Query: 539 GXXPXXXFXAAPXXXXAXXPXLPR---PRXXXAXGHXPXXRGXXGXPPXFXFPTARXRXP 369
P +P P LP P P PP P+ R
Sbjct: 592 PPLP-NCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLV 650
Query: 368 PXPPAP 351
P PPAP
Sbjct: 651 PPPPAP 656
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/123 (23%), Positives = 34/123 (27%)
Frame = -3
Query: 719 PXATRXXVPPPPXLXMXPSRXPXAXXPRPHSPXAWXVXFTRXPXXAXXPPXPXXXRWXGP 540
P + + PPPP PS P P+P P T P PP R P
Sbjct: 182 PPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPP------TLPPPSPPPPPPTVPPR--TP 233
Query: 539 GXXPXXXFXAAPXXXXAXXPXLPRPRXXXAXGHXPXXRGXXGXPPXFXFPTARXRXPPXP 360
G P + PR P P + PTA P
Sbjct: 234 GDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTPPEPTK 293
Query: 359 PAP 351
P P
Sbjct: 294 PKP 296
Score = 28.7 bits (61), Expect = 6.5
Identities = 28/112 (25%), Positives = 31/112 (27%)
Frame = -3
Query: 692 PPPXLXMXPSRXPXAXXPRPHSPXAWXVXFTRXPXXAXXPPXPXXXRWXGPGXXPXXXFX 513
PPP L P P PRP S V P + PP P P
Sbjct: 148 PPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQ 207
Query: 512 AAPXXXXAXXPXLPRPRXXXAXGHXPXXRGXXGXPPXFXFPTARXRXPPXPP 357
P P P P P G P P + + PP PP
Sbjct: 208 PKPQPPPTLPPPSPPPPPPTVPPRTP------GDTPAVVEP--KPQPPPPPP 251
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.5 bits (63), Expect = 3.7
Identities = 35/130 (26%), Positives = 39/130 (30%), Gaps = 3/130 (2%)
Frame = -3
Query: 719 PXATRXXVP---PPPXLXMXPSRXPXAXXPRPHSPXAWXVXFTRXPXXAXXPPXPXXXRW 549
P +R +P PP R P P P P + F R P P P
Sbjct: 146 PQISRPPMPNLSAPPVAYPQVVRPPPGQMPPPMRPPQMPIPFQRPP--GVPPAFPG---- 199
Query: 548 XGPGXXPXXXFXAAPXXXXAXXPXLPRPRXXXAXGHXPXXRGXXGXPPXFXFPTARXRXP 369
GP P P P+ R G P R G PP P R P
Sbjct: 200 -GPPPPPGPFMRGPPPMGP------PQVRPGMPGGPPPGMR--PGMPP----PPFRPGMP 246
Query: 368 PXPPAPYSXG 339
P PP P G
Sbjct: 247 PPPPGPQQPG 256
>04_03_0958 -
21241230-21241327,21241693-21241893,21241989-21242110,
21242462-21242536,21242626-21242714,21242808-21242888,
21243552-21243674
Length = 262
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 309 RXRGRXKXXXXRRIGGRGXGXPXPP 383
R RGR + R GGRG G P PP
Sbjct: 236 RGRGRGRGCGRGRGGGRGRGPPPPP 260
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 6.5
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Frame = -1
Query: 697 SPPPPPXRCXPXAPLAXXXPDRTLLXRGXXXSLGXLPPRXXLPXPXXRAGXAPVXRPXXX 518
SPPPP P AP+ P L SL PP LP P + PV +
Sbjct: 1240 SPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPP-PPVKSLPPPAPVSLPPPVVKSLPP 1298
Query: 517 SXRXRXPXXRXXP-XSHAPGXVXPXAXXP 434
P P AP + P A P
Sbjct: 1299 PAPVSLPPPAVKPLPPPAPVSLPPPAVKP 1327
>04_03_0969 +
21331989-21332674,21333090-21333194,21333269-21333391,
21333458-21333628,21333710-21333839,21333926-21334135,
21334700-21334855
Length = 526
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 633 RSGXXXARGAXGXHRXGGGGG 695
RSG +RG G R GGGGG
Sbjct: 142 RSGGPSSRGGSGESRGGGGGG 162
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = -3
Query: 695 PPPPXLXMXPSRXPXAXXPRPHSPXAWXVXFTRXPXXAXXPPXPXXXRWXGPGXXP 528
PPPP P P P PH P + P PP P W P P
Sbjct: 289 PPPPPPPAFPFPFPQLP-PLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAP 343
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = -3
Query: 695 PPPPXLXMXPSRXPXAXXPRPHSPXAWXVXFTRXPXXAXXPPXPXXXRWXGP 540
PPPP + P + P P P++P P PP P GP
Sbjct: 267 PPPPQVPPPPPQAPPP--PPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGP 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,076
Number of Sequences: 37544
Number of extensions: 255593
Number of successful extensions: 1708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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