Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_O10
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    42   1e-04
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   3.4  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    26   7.9  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 646 PLIRPCRCTGDVSAVHHDCLSRWLVESAASPDGLKCKVCNTPY 518
           PL  PC+CTG +  VH +CL  WL  S  +     C++C   +
Sbjct: 20  PLFHPCKCTGSIRYVHQECLVEWLGHSKKT----HCELCKAKF 58


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 725 HVPWPSWLXLAXQG 766
           H+ WPSWL LA  G
Sbjct: 148 HIQWPSWLVLANVG 161


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +2

Query: 674 SXXPGSDPXLSXN-RVPLHVPWPS 742
           S  PG +P    + + P+H PWPS
Sbjct: 119 SAPPGYNPETGQDAKAPVHYPWPS 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,554
Number of Sequences: 5004
Number of extensions: 33553
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)