Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_O09
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    32   0.56 
Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    30   2.3  
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    30   2.3  
AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    30   2.3  
AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    29   3.9  
L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     29   3.9  
AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen prot...    29   3.9  
L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protei...    29   5.2  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    29   5.2  
Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   9.1  
AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen prot...    28   9.1  

>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +3

Query: 120 PRNFRAHPLND-SPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTE-PSRR 293
           P +    P N+ SP  + P+ +P     P      P    QP G   P    P+E P   
Sbjct: 77  PTSVVPQPSNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPS 136

Query: 294 IEGSETSAVSVRQPVGPP 347
           +E SE       QP GPP
Sbjct: 137 VEPSED-----HQPSGPP 149


>Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical
           protein F08G5.4 protein.
          Length = 299

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 389 SGPAGYSGTPAAPSGRPDGLPYRDG 315
           +GPAG  G P AP   PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166


>Z22177-7|CAA80149.1|  171|Caenorhabditis elegans Hypothetical
           protein ZK512.8 protein.
          Length = 171

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 153 SPALLHPT--SDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSV 326
           SP   H +  S+P   +  DE+  L R  +  D   HP + +  +P  + E S TSA S 
Sbjct: 43  SPVSTHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSN 102

Query: 327 RQ-PVGPPRRCRWCPGIP 377
              PV  P       G+P
Sbjct: 103 SSLPVRSPAIMTLMGGVP 120


>Z81050-3|CAB02849.1|  291|Caenorhabditis elegans Hypothetical
           protein C50B6.4 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -3

Query: 389 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 309
           +GPAG +G P AP   G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
            K04H4.1b protein.
          Length = 1502

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -3

Query: 410  VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
            VP +Q  SG  GY G P  P  +     DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
            K04H4.1a protein.
          Length = 1759

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -3

Query: 410  VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
            VP +Q  SG  GY G P  P  +     DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421


>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -3

Query: 410  VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
            VP +Q  SG  GY G P  P  +     DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420


>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 150 DSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHP 260
           D P + HP   PL   +P   G +PR+ L P+GA  P
Sbjct: 319 DEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354


>AL021448-3|CAA16275.1|  291|Caenorhabditis elegans Hypothetical
           protein Y2H9A.3 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 389 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 309
           +GPAG +G P AP   G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198


>Z74037-4|CAA98490.1|  295|Caenorhabditis elegans Hypothetical
           protein F57B7.3 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 389 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 303
           +GP G +GTP  P  +  DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 425 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 315
           ST   +P      GP G  G P AP   P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 386 GPAGYSGTPAAPSG-RPDGLPYRDG 315
           GP+G SG PA P    PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150


>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 386 GPAGYSGTPAAPSG-RPDGLPYRDG 315
           GP+G SG PA P    PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150


>AF099925-3|AAC69507.1|  394|Caenorhabditis elegans Collagen protein
           69 protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 386 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 294
           GP GY G P  P  R  DG P  +G    A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175


>L11247-3|AAA28008.1|  278|Caenorhabditis elegans Collagen protein
           91 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -3

Query: 386 GPAGYSGTPAAPSGRP--DGLPYRDGRR 309
           GPAG +G P AP G P  DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 386 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 288
           GPAG +G+P  P G P   G P R G+R R    P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206


>Z70756-6|CAA94792.1|  290|Caenorhabditis elegans Hypothetical
           protein T06E4.6 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 407 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 312
           P +  G+G  G +G P AP G   G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248


>U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical
           protein F11G11.5 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
 Frame = +3

Query: 171 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR------------IEGSETS 314
           P   PL    P + G +  S+ QP   + P+  QPT PSR             I+ S   
Sbjct: 7   PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64

Query: 315 AVSVRQPVGPP 347
            VS   P GPP
Sbjct: 65  HVSAPVPAGPP 75


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 588 SPPSQGPQKGFCPTSAPVRGELPPV 514
           +PPS GP   F P+ AP  G +PPV
Sbjct: 505 APPSGGPPGPFDPSGAPPSG-MPPV 528


>AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen protein
           108 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 407 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 312
           P      GPAG +G P AP G P G P  DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,874
Number of Sequences: 27780
Number of extensions: 380707
Number of successful extensions: 1667
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1655
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)