Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_O03
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   4.2  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   4.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.6 bits (46), Expect(2) = 4.2
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +3

Query: 660 PXESXPLSPXYPXASXGPXPPPGNXPXPXLFXIXGSLXLAXPP 788
           P    P  P  P    G  PPP   P P +    GS   A  P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPAV-SAGGSRYYAPAP 797



 Score = 22.2 bits (45), Expect(2) = 4.2
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +3

Query: 483 PXXIXXSTPXPXXTPXPRXAXXPLXPPKP 569
           P  +   TP P   P P  A     PP P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 444 SSPPGWTTAFLVIPXXIXXSTPXPXXTPXPRXAXXPLXP 560
           SS   +TT  +V+P     ++     TP P  A  PL P
Sbjct: 276 SSVVAYTTKCIVVPVITTAASQSEAATPSPSAAVYPLFP 314


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 341 SHGATXDXXLPXSTPPXTPPXXPPXA 418
           S  +T     P S PP  PP  PP A
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSA 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,346
Number of Sequences: 5004
Number of extensions: 18425
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)