Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_O03
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 26 0.86
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 31 0.90
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.2
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.6
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 30 2.7
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 4.8
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 29 6.3
07_03_1433 + 26513728-26514135,26525534-26526280 25 7.4
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 8.4
01_06_0146 + 26969011-26969995,26970878-26970930 23 9.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 25.8 bits (54), Expect(2) = 0.86
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 417 PXXPXRXXPSSPPGWTTAFLVIPXXIXXSTPXPXXTPXPRXAXXPLXPP 563
P P R PS P A + P P P P P A P PP
Sbjct: 289 PLPPGRESPSRPQSIAAAAVASP------APPPPPPPKPAAAAPPPPPP 331
Score = 24.2 bits (50), Expect(2) = 0.86
Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Frame = +3
Query: 660 PXESXPLSPXYPXASXGPXPPP---GNXPXP 743
P P P P + GP PPP G P P
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPP 366
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/70 (27%), Positives = 21/70 (30%)
Frame = +2
Query: 395 PPXXPPXAXXPXSRFXVFPTRLDHRLSCHSXXXXPXNPSPXXXSXXXXXXXPPXXSQTXN 574
PP PP P + V P D LS P P PP
Sbjct: 84 PPPPPPVPPCPPNATHVVPCHEDDELSGERHCPPRPPPPPPPHPPEDPPPHPPHPPDHPP 143
Query: 575 PPXLKKXPPP 604
PP + PPP
Sbjct: 144 PPPPCRVPPP 153
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/84 (23%), Positives = 27/84 (32%)
Frame = +2
Query: 353 TXDXXLPXSTPPXTPPXXPPXAXXPXSRFXVFPTRLDHRLSCHSXXXXPXNPSPXXXSXX 532
T +P + PP PP + P + P L + + P P P +
Sbjct: 703 TNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPPPLP---AAANKRNPPAPPPPPLMTGK 759
Query: 533 XXXXXPPXXSQTXNPPXLKKXPPP 604
PP Q PP PPP
Sbjct: 760 KAPAPPPPPPQAPKPPGTVPPPPP 783
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/78 (25%), Positives = 21/78 (26%)
Frame = +2
Query: 371 PXSTPPXTPPXXPPXAXXPXSRFXVFPTRLDHRLSCHSXXXXPXNPSPXXXSXXXXXXXP 550
P PP PP PP P F P + P P P P
Sbjct: 50 PFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPP-PPPPPYGVNSSQPPP 108
Query: 551 PXXSQTXNPPXLKKXPPP 604
P PP PPP
Sbjct: 109 PPPPPPSPPPSAPPPPPP 126
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 335 RHSHGATXDXXLPXSTPPXTPPXXPPXAXXPXSRF 439
R S G+ + ++PP PP PP P SRF
Sbjct: 307 RFSAGSGAEMNKQMASPPSNPPPAPPPPPPPPSRF 341
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.1 bits (62), Expect = 4.8
Identities = 24/95 (25%), Positives = 29/95 (30%)
Frame = +2
Query: 329 ARRHSHGATXDXXLPXSTPPXTPPXXPPXAXXPXSRFXVFPTRLDHRLSCHSXXXXPXNP 508
A HSH T +P + P PP P A P + + P S H P P
Sbjct: 142 APSHSHAKTPS--MPPAERPALPPTKAPAAISPATPPQLSPANAH---STHHHAKPPSLP 196
Query: 509 SPXXXSXXXXXXXPPXXSQTXNPPXLKKXPPPXXR 613
PP S + P PP R
Sbjct: 197 PAEPPVPSPSPEHPPRHSPSKPPAYAPAKPPTALR 231
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 332 RRHSHGATXDXXLPXSTPPXTPPXXPPXAXXPXS 433
RRH H + P PP TPP PP P S
Sbjct: 14 RRHVHRRSKPATAPPPPPPPTPP-RPPQKPEPVS 46
>07_03_1433 + 26513728-26514135,26525534-26526280
Length = 384
Score = 25.0 bits (52), Expect(2) = 7.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 371 PXSTPPXTPPXXPPXAXXPXSRFXVFPT 454
P S P PP PP + P S V P+
Sbjct: 37 PPSLSPSMPPTYPPPSSTPPSPAPVSPS 64
Score = 21.8 bits (44), Expect(2) = 7.4
Identities = 10/32 (31%), Positives = 11/32 (34%)
Frame = +2
Query: 506 PSPXXXSXXXXXXXPPXXSQTXNPPXLKKXPP 601
PSP S PP + NP PP
Sbjct: 56 PSPAPVSPSPPTTYPPPSTTPPNPAPTSPSPP 87
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 660 PXESXPLSPXYPXASXGPXPPPGNXPXP 743
P PL P P + P PPP P P
Sbjct: 202 PPPQAPLPPPAPVPAPAPPPPPAAAPAP 229
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 23.4 bits (48), Expect(2) = 9.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 660 PXESXPLSPXYPXASXGPXPPPGNXPXPXL 749
P S S P + P PPP P P L
Sbjct: 61 PNHSGDPSRPIPSQAPAPPPPPTADPSPPL 90
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 444 SSPPGWTTAFLVIPXXIXXSTPXPXXTPXPRXAXXPLXP 560
S PP T P I P P P P A P P
Sbjct: 21 SHPPPPTPHPATDPPPISPQNPTPPPPPLPASAAAPTTP 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,944
Number of Sequences: 37544
Number of extensions: 250714
Number of successful extensions: 1687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -