Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_O02
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    29   0.58 
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.77 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   1.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.1  
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    27   4.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   5.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   7.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.2  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   7.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   9.5  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   9.5  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 16/75 (21%), Positives = 37/75 (49%)
 Frame = -2

Query: 596  VAATIFRNXKPSVSIQLHSQPASASNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGR 417
            VA TIF +      +    +P++ ++ + +  +  + +   +++ P  DDDDF  +  G 
Sbjct: 1357 VATTIFSSDDEDDLLPSSLKPSTITSTKASAKNKGKKASSVKKQSPEDDDDDF--IIPGS 1414

Query: 416  DDHPNIGASSVQPPK 372
               P   +++ +PP+
Sbjct: 1415 SSTPKASSTNAEPPE 1429


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 476 PQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 300
           P +KK TLDD D P+ S   D       S +         ++E +    N+ +S P  S
Sbjct: 94  PSKKKATLDDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKETTTNKNESLPGTS 152


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
 Frame = -2

Query: 485 SIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQT---QS 315
           SI  +     L+     S++   +  P+  A +  P     ++  E  A+ N  T   + 
Sbjct: 552 SISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVNNYATPLSKP 611

Query: 314 QPK--KSQRSTEAFPALSATAHSPAAPP 237
           QPK  K  +    F A S  A  PA+PP
Sbjct: 612 QPKDTKGSKLGNTFVAPSPAASLPASPP 639


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
 Frame = -2

Query: 554  IQLHSQPASASNFRLT---QTSGNRI-SIPPQQKKPTLDDDDFPS-LSMGRDDHPNIGAS 390
            +++      ASN RL    + +G  I S+  + +K   ++DD  S LS+   ++ N+   
Sbjct: 1002 VEVERNALLASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEYENLLLI 1061

Query: 389  SVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSTE 285
            S Q  K     + +++ ++ N  +   +K QR+ E
Sbjct: 1062 SSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRNVE 1096


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 332 NNQTQSQPKKSQRSTEAFPALSATAHS 252
           +NQT   P    +STE  P  S T HS
Sbjct: 269 SNQTFMAPASGLQSTEEIPQFSKTGHS 295


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/89 (22%), Positives = 39/89 (43%)
 Frame = -2

Query: 515 RLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQAL 336
           R  +T+ +R + PPQ +    +D+D    S   DD P I  + ++         + M+ +
Sbjct: 110 RRRKTNNDRRNYPPQNRTAKPNDNDGDDYSFFEDDLPVIKDTFMR--GFQSFKQRSMEWV 167

Query: 335 KNNQTQSQPKKSQRSTEAFPALSATAHSP 249
           +N  ++   ++     E + A S    SP
Sbjct: 168 ENIASKFDGEEEDDDDEKYSAPSKIYPSP 196


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = -2

Query: 482 IPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKK 303
           +P Q  K  +  +  PSL    +  P  G+        +  NS +   ++N+QTQS   +
Sbjct: 367 VPSQFYKQKVVQNSPPSLLSTDNKIPESGSDHPS----SQDNSSKASLVENSQTQSSTPR 422

Query: 302 SQRSTEAFPALSATAHS 252
               T   P ++   HS
Sbjct: 423 KPLPTTTSPKVNPEPHS 439


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 302 SQRSTEAFPALSATAHSPAAPPQWITVS 219
           S R  E  P+LSA A  P  PP   TVS
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVS 265


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 359 NSQEMQALKNNQTQ--SQPKKSQRSTEAFPALSATAHSPAAPPQWIT 225
           + QE+ ++  N+ Q  S P     S E   +L+A AH+P     W T
Sbjct: 304 DEQEVSSMMGNRWQHSSTPASLFNSVERNNSLTAVAHNPPGSIGWQT 350


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
 Frame = -2

Query: 596 VAATIFRNXKPSVSIQLHSQPASASNFRLTQTSGNRISIPPQQKKP---TLDDDDFPSLS 426
           V+AT   N    +     SQ   A +      + +  S P  +      + D DD     
Sbjct: 231 VSATNEANKLSDIQTSSPSQDIPAKHLEPLHLNRSLSSSPSSEDSDLSLSSDSDDDEKKQ 290

Query: 425 MGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRS 291
             + +  +  + S++PPK+    S+E   +   +    P    +S
Sbjct: 291 PSKSEKTSSMSVSIKPPKIIRKGSKEQNRIAKEKASGAPLTKSKS 335


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -2

Query: 437 PSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSTEAFPALSATA 258
           PS++M   + PN        P    I+S   Q   +    S+  K+ + T+A  AL    
Sbjct: 343 PSMNMFAQNGPNTSLLPTAMPSDVSISSSLQQQPIHPSYDSRFSKAPQGTDALAALGYGT 402

Query: 257 HSPAA 243
            S AA
Sbjct: 403 PSSAA 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,527
Number of Sequences: 5004
Number of extensions: 42039
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)