Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_O02
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 32 0.61
08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527... 30 1.9
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 30 1.9
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 30 2.5
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207... 30 2.5
07_03_1280 + 25434933-25436153 29 4.3
04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449 29 5.7
12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553... 28 7.6
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 28 7.6
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 28 10.0
07_02_0009 - 11716174-11716435,11716837-11717459,11718385-117184... 28 10.0
04_01_0006 - 112476-114182,114627-114676,115289-115463 28 10.0
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 28 10.0
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 239 GVRRGSGRWRTAQGTPPYSAGTSLVATGFGYF 334
G RRG+GRWR A+G+ Y GT ++ YF
Sbjct: 523 GGRRGTGRWRRAEGSGDY--GTDNISNTSTYF 552
>08_02_1296 -
25951758-25951983,25952134-25952159,25952626-25952710,
25952828-25952959,25953037-25953180,25953254-25953312,
25953381-25953687,25954211-25954292,25954369-25954502,
25954587-25954680,25954751-25954874,25955136-25955195
Length = 490
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -2
Query: 428 SMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSTEAFPALSAT---A 258
S D HP S+QPP+ T+ N+ Q + + + Q +K + PA++ T A
Sbjct: 287 SSKEDQHPTT-PPSLQPPETTLDNNTVNQIIPSAKRALQFEKELHIDQPSPAIANTIQVA 345
Query: 257 HSPAAPPQWITVSKGK 210
+ PQ + +SK K
Sbjct: 346 TNQLYHPQQVDLSKEK 361
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 476 PQQKKPTLDDDDFPSLSMGRDDHP-NIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 300
P KP L P SMG + ++G +++QPPK +++S+ ++A K + S
Sbjct: 496 PSPSKP-LSTKKAPRHSMGGANRRLSLGGATMQPPKTDILHSKSVRAAKKTEEIGTLSPS 554
Query: 299 QRSTE 285
R +
Sbjct: 555 SRGLD 559
>08_02_1508 + 27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 29.9 bits (64), Expect = 2.5
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = -2
Query: 551 QLHSQPASASNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPK 372
Q+ SQ S+F T+ N IS Q T+ D P + +D P + SV +
Sbjct: 976 QMPSQAPLPSSFS-TRNKENGISEAGQTN--TVAPDGLPGPGVPKDAGPQVAGPSVVKSQ 1032
Query: 371 VTMINSQE----MQALKNNQTQSQPKKSQRSTEAFPAL 270
M + Q L N+Q +SQP++++ A AL
Sbjct: 1033 KNMNEAYNDGPSTQQLPNDQYRSQPREAKEEQGADAAL 1070
>03_02_0644 +
10118790-10119559,10120252-10120432,10120526-10120725,
10120834-10120992,10122375-10122741
Length = 558
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 327 PNPVATKEVPAEYGGVPCAVRHRPLPRRTPAVD 229
PN + T E YGG+ CA+ P+ RT ++D
Sbjct: 433 PNHI-TPEAWGNYGGIKCAMETLPITNRTTSLD 464
>07_03_1280 + 25434933-25436153
Length = 406
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 226 VIHCGGAAGEWAVADSAGNASVLRWDFFGCDW 321
V+ CGG A +++ G AS+ W+F G W
Sbjct: 293 VVACGGRAYVVVLSELLGTASLRLWEFAGGAW 324
>04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449
Length = 229
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 551 QLHSQPASASNFRLTQTSGNRISIPPQQKKPTLDDDDF 438
+L + P ASN L + SG R S P+ + P DD+DF
Sbjct: 186 ELFASPQPASNMGLYKASGARQSKKPRVEIPD-DDEDF 222
>12_02_0900 -
24153734-24153943,24154461-24155110,24155198-24155334,
24156595-24157223
Length = 541
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 272 AQGTPPYSAGTSLVATGFGYFLTLAFLD 355
A G PP+S + TG G+ +++AFLD
Sbjct: 76 ASGIPPFSWRKLWLFTGPGFLMSIAFLD 103
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = -2
Query: 485 SIPPQQKKPTLDDDDFPSLSMGRDDHP----NIGASSVQPPKVTMINSQEMQALKNN--- 327
++P +K+P + + +P L+ D H N+G S Q ++ + LK+
Sbjct: 673 NVPESEKQPVQNAEKYPFLTTTIDSHEVPNFNLGFDSSQEVVQHQRGKKQQEHLKDYGSF 732
Query: 326 QTQSQPKKSQRSTEAFPALSATAHSPAA 243
T+ K + + EA + SAT SP A
Sbjct: 733 TTEDYEKVGREADEAIASKSAT-KSPVA 759
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -2
Query: 587 TIFRNXKPSVSIQLHSQPASASNFRLTQTSGNRISIPP--QQKKPTLD---DDDFPSLSM 423
T + K S+ I + +PA +S LT+ +S+PP +Q+ L D DF M
Sbjct: 302 TFIQWPKHSIEINITPRPAPSSRPPLTRPHQTVVSLPPAVEQRDEDLQLQYDTDFGDDGM 361
Query: 422 GRDDHPNI 399
D P++
Sbjct: 362 EVDSRPHL 369
>07_02_0009 -
11716174-11716435,11716837-11717459,11718385-11718469,
11719346-11719374
Length = 332
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 419 RDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRS--TEAFPALSATAHSPA 246
+D HP + + + + EM+ N+ P + EA PA +ATA +P
Sbjct: 258 KDSHPELARQTT----AQLTHPSEMRDENENKETPFPAVVMEAPKVEATPAAAATAPAPP 313
Query: 245 APP 237
APP
Sbjct: 314 APP 316
>04_01_0006 - 112476-114182,114627-114676,115289-115463
Length = 643
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 218 WKR*STAGVRRGSGRWRTAQGTPPYSAGTSLVAT 319
W+R +AG RRG T GTP G L T
Sbjct: 577 WRRGQSAGRRRGGESEETPVGTPRARGGEPLTPT 610
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 436 GKSSSSRVGFFCCGGIEMRFP 498
G SSS +GF CC +M+FP
Sbjct: 456 GGSSSPTIGFRCCRVSQMKFP 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,370,664
Number of Sequences: 37544
Number of extensions: 358196
Number of successful extensions: 1191
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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