Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_N18
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 213 2e-56
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 212 6e-56
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 40 4e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 5.5
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 7.3
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 7.3
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 213 bits (521), Expect = 2e-56
Identities = 104/160 (65%), Positives = 118/160 (73%)
Frame = -3
Query: 807 KLVXAARAXVXIXNPXDVLVXSSRPFGQRAVLKFAAHTGVTLIAXRFTPGAXTNQIQAAF 628
KLV AAR I NP DV V SSRP+G RAVLKFAAHTG T IA RFTPG TN I +
Sbjct: 60 KLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119
Query: 627 REPRFLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 448
REPR +IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179
Query: 447 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 212 bits (517), Expect = 6e-56
Identities = 103/162 (63%), Positives = 118/162 (72%)
Frame = -3
Query: 807 KLVXAARAXVXIXNPXDVLVXSSRPFGQRAVLKFAAHTGVTLIAXRFTPGAXTNQIQAAF 628
KLV AAR I NP DV V S+R +G RAVLKFAAHTG T IA RFTPG TN I +
Sbjct: 59 KLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118
Query: 627 REPRFLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 448
REPR ++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178
Query: 447 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 322
LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 621 PRFLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
P +++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 441 AR 436
+R
Sbjct: 240 SR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 684 LIAXRFTPGAXTNQIQAAFREPRFLIVLDPAQDHQPITEASYVN 553
L+ +FTP +N A R R H P+ ++ YVN
Sbjct: 128 LLNFQFTPRTNSNAFSAPPRRSRGYNTYGQGSGHHPMDKSRYVN 171
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 620 GSRNAAWIWLVXAPGVKRXAISVTPVCAA 706
G+ +A W WL+ G A+SV + +A
Sbjct: 92 GAPSAVWCWLIAGAGCMCIALSVAELVSA 120
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 355 RVAVEEQINHNIPALVTGKHTTKPQHFTC 441
+VAV+E +N++IP + T T++ FTC
Sbjct: 658 QVAVQEWMNYHIPGICT---TSQSNGFTC 683
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,784
Number of Sequences: 5004
Number of extensions: 56009
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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