Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_M20
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 228 6e-61
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 228 6e-61
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 1.0
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.4
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 3.2
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 27 4.2
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 5.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 7.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 228 bits (558), Expect = 6e-61
Identities = 120/224 (53%), Positives = 151/224 (67%), Gaps = 2/224 (0%)
Frame = -2
Query: 774 QKRXHIMEIQL*RGTIEDKVKWXREHLENXIPCRFCVCPR*ND*LHWCH-PRAKDTK-VS 601
QK+ H+MEIQ+ G++ DKV+W REH E + + N+ + R K + +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTF--EQNEMIDVIGVTRGKGNEGTT 230
Query: 600 LLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGI 421
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 231 ARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG- 288
Query: 420 HKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSL 241
D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL
Sbjct: 289 --DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSL 342
Query: 240 RVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 343 LTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 43.2 bits (97), Expect = 5e-05
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -1
Query: 625 KGKGYKGVTSRWHTKKLPRKTHQG 554
+GKG +G T+RW TK+LPRKTH+G
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 228 bits (558), Expect = 6e-61
Identities = 120/224 (53%), Positives = 151/224 (67%), Gaps = 2/224 (0%)
Frame = -2
Query: 774 QKRXHIMEIQL*RGTIEDKVKWXREHLENXIPCRFCVCPR*ND*LHWCH-PRAKDTK-VS 601
QK+ H+MEIQ+ G++ DKV+W REH E + + N+ + R K + +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTF--EQNEMIDVIGVTRGKGNEGTT 230
Query: 600 LLVGTQRSYPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGI 421
GT+R P + + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G
Sbjct: 231 ARWGTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG- 288
Query: 420 HKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSL 241
D K NAST++D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL
Sbjct: 289 --DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSL 342
Query: 240 RVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 343 LTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 43.2 bits (97), Expect = 5e-05
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -1
Query: 625 KGKGYKGVTSRWHTKKLPRKTHQG 554
+GKG +G T+RW TK+LPRKTH+G
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTHRG 245
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +1
Query: 400 NFAILFVDSLSNTIDFLVHFSTVMITFLASTSYSERHPRRMPSSNAGNFPKXLGVSYGVA 579
NFA+L+ SL ++ +F++H +T + T+Y + + +N N K + + +
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432
Query: 580 SLCANEK 600
SL AN +
Sbjct: 433 SLPANSR 439
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 367 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLAS 489
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 604 HLCIL-CPWVTPMQSIISSWANTESTGDXVLQMFSGPFHFVLDGTPLKLD 750
H CI+ + +QS+ S+ N + D L++FS ++DG P D
Sbjct: 1369 HKCIVNSHLIRGLQSLYISYINDSFSVDNCLRLFSWSHSLLVDGQPYFAD 1418
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 352 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITFLASTSYSERHPRRMPS 528
N FL + SRC V N+ I + V S ++F++ M+ + S S+ + R+ S
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY-GSPSHKIQQSLRIAS 424
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 487 WPERLSSPY*NEQENLSYWTRNPQKGWQS 401
+P RLS+P +++ N WT + G+ S
Sbjct: 471 YPRRLSNPPPSQKTNQDAWTNRKRPGYSS 499
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 763 SHYGNPTLTGYHRGQSEMXQRTSGE 689
SH+G+ ++G HRG +R GE
Sbjct: 932 SHHGHGGMSGSHRGSQRGSRRGGGE 956
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 412 LFVDSLSNTIDFLVHFSTVMITFLASTSYSERHPRRMPSSNA 537
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,587
Number of Sequences: 5004
Number of extensions: 76041
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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