Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M19
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   6.9  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   6.9  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U28731-9|AAA68301.2|  437|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 492  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 376
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 492  HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 376
            H D + E+ ++ + S   RH  +    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
            ZK1193.2 protein.
          Length = 1250

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 310  GRIRDDVFWATSTAFHSVRRIGNVVTGGHDERVLVSCRFIEVAH 441
            G I D++++AT  A   V  IGN ++ GHD   ++   +  ++H
Sbjct: 1065 GSISDEMYYATVGA---VNTIGNAISIGHDHSRILLGTYDAISH 1105


>U28731-9|AAA68301.2|  437|Caenorhabditis elegans Hypothetical
           protein F12A10.8 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -1

Query: 528 SEPPWFVRNVDLHDDLDLESISKYLQSASM-RHFDKAARHENPLIVAAGNYIPDPADRME 352
           S+P +   N    D L+L+S   + +++ + ++ D++ +H+  ++ + G+Y     D  +
Sbjct: 316 SKPRFDEANFHNEDPLNLDSQEDFFETSYLPKNADESKKHQKSMLPSFGDYTTKSDDERQ 375

Query: 351 SSR 343
            +R
Sbjct: 376 KNR 378


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 369 PADRMESSRRRPKHVISDPPDP 304
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,220
Number of Sequences: 27780
Number of extensions: 219308
Number of successful extensions: 512
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)