Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M18
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.059
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.31 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.059
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 697 PPPXXPPPPXGGGGXAXPPPXXP 629
           PPP  PPP   G G   PPP  P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 700 PPPPXXPPPPXGGGGXAXPPP 638
           PPPP  PP   G G    PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 700 PPPPXXPPPPXGGGG 656
           PPPP  PPP    GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -2

Query: 561 PPPPFFFFX*XKKXXXXXXXPPPPXXXXXPPPPP 460
           PPPP                PP P     PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +3

Query: 630 GXXGGGXAXPPPPXGGGGXXGGGG 701
           G  GGG   PPP  GG G  GG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFG 214


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 700  PPPPXXPPPPXGGGGXAXPPPXXP 629
            PPPP  PP P   G  + PPP  P
Sbjct: 1715 PPPPSAPPMP--AGPPSAPPPPLP 1736



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 700  PPPPXXPPPPXGGGGXAXPPPXXP 629
            PPP   PPPP      A PP   P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 697 PPPXXPPPPXGGGGXAXPPPXXP 629
           PPP  PPPP G    + PPP  P
Sbjct: 9   PPP--PPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,550
Number of Sequences: 5004
Number of extensions: 23798
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)