Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M13
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    27   4.1  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   7.2  

>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +3

Query: 495 HSHENDPMELMQRPPEHKPGTAAH--SSMSWHSLXARFRRCPTG 620
           H H+ND +   ++P  HK    AH      W +L  RF  C  G
Sbjct: 447 HLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTL--RFNECVCG 488


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 451 LRSCWRGDAGAVLADIRMKMT 513
           +  CW GD   +LAD+ ++ T
Sbjct: 184 IEDCWTGDDNVILADLDIEST 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,555
Number of Sequences: 5004
Number of extensions: 48957
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)