Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M09
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870...    40   0.002
04_03_0629 + 18179065-18179148,18180146-18180287,18180987-181810...    32   0.45 

>02_05_1140 +
           34386042-34386302,34386738-34386917,34386999-34387080,
           34387180-34387287,34387442-34387630,34387814-34388010
          Length = 338

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = -3

Query: 623 AGLNLRHLLFQHGRGXTVRRAVHSVFTLWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNI 444
           AGL  R L     +   V     +V+    QGKVKP++  T+ L +  EA + M +  +I
Sbjct: 275 AGLRNRSL---DNKALIVSEVEKNVWPAVVQGKVKPVIYKTFPLSEAAEAHKLMEESSHI 331

Query: 443 GKLVLDP 423
           GK++L P
Sbjct: 332 GKILLIP 338


>04_03_0629 +
           18179065-18179148,18180146-18180287,18180987-18181078,
           18181272-18181964
          Length = 336

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 542 LWAQGKVKPIVDSTWALEDVGEAMQKMHDRKNIGKLVLD 426
           L  +GK++ +VDS + L D  +A QK  D    GK+V++
Sbjct: 295 LVGEGKLRTVVDSRFPLGDAAKAWQKSIDGHATGKIVVE 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,355,202
Number of Sequences: 37544
Number of extensions: 315771
Number of successful extensions: 1309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)