Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M07
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.1  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   8.6  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.6  

>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 296 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 171
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 344 PSTSPKARHYGSS*SXNGAFRHHKHRSPSSSNP-SLATKGSTSELTHRHSPLSFSPDLLS 168
           PS   +A    SS S + +  H    S SSS+P S +T  S+       S +S S +++S
Sbjct: 46  PSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDVSASNEIIS 105

Query: 167 GS 162
            S
Sbjct: 106 SS 107


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 365 PSRPNGKPSTSPKARHYGSS*SXNGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSF 186
           PS  +   +TSP +    SS S + +       S SSS+ S ++  S+S  +   S  S 
Sbjct: 144 PSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 203

Query: 185 S 183
           S
Sbjct: 204 S 204


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = -3

Query: 365 PSRPNGKPSTSPKARHYGSS*SXNGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSF 186
           PS  +   S+SP +    SS S + +       S SSS+ S ++K S+S  +   S  S 
Sbjct: 154 PSSSSSSSSSSPSSSSSKSS-SSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASP 212

Query: 185 SPDLLSGSRFRS 150
           S    S S+F S
Sbjct: 213 SSS-KSSSKFSS 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,071
Number of Sequences: 5004
Number of extensions: 28607
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)