Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M07
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119...    31   0.73 
10_08_0898 + 21424379-21424792,21424974-21425723                       28   6.8  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           28   6.8  
02_02_0537 + 11308195-11309667                                         28   6.8  
01_05_0645 - 23899579-23904483                                         28   6.8  
01_01_0060 + 477667-477816,479312-479722                               28   6.8  

>03_03_0042 +
           14009649-14009866,14011342-14011419,14011791-14011955,
           14012071-14012138,14012219-14012258,14013579-14013690,
           14013859-14013942
          Length = 254

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 386 AGNYXPDPSRPNGKPSTSPKARHYGSS*SXNGAFRHHK-HRSPSSSNPSLATKGSTSELT 210
           +G Y  D S      S SP++R++  S S + A R ++ HR   S   SL+  G      
Sbjct: 154 SGRYM-DGSHRRRSVSRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQDKR-H 211

Query: 209 HRHSPLSFSPDLL 171
           HR +  S SPD L
Sbjct: 212 HRSNGRSASPDEL 224


>10_08_0898 + 21424379-21424792,21424974-21425723
          Length = 387

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 281 HHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPD 177
           HH H       PS AT  +TS   H+ S LSF+ D
Sbjct: 101 HHHHHIGGMGEPSGATPSATSS-DHQTSMLSFADD 134


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -3

Query: 341  STSPKARHYGSS*SXNGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 162
            ST P +       + N   +   H  PSSS     T   T  + H H P SF P  +  +
Sbjct: 973  STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 1031

Query: 161  RFRSGGRFC 135
            + ++  R C
Sbjct: 1032 QPKAPCRSC 1040


>02_02_0537 + 11308195-11309667
          Length = 490

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -3

Query: 341 STSPKARHYGSS*SXNGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 162
           ST P +       + N   +   H  PSSS     T   T  + H H P SF P  +  +
Sbjct: 131 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 189

Query: 161 RFRSGGRFC 135
           + ++  R C
Sbjct: 190 QPKAPCRSC 198


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -3

Query: 341  STSPKARHYGSS*SXNGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 162
            ST P +       + N   +   H  PSSS     T   T  + H H P SF P  +  +
Sbjct: 1250 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 1308

Query: 161  RFRSGGRFC 135
            + ++  R C
Sbjct: 1309 QPKAPCRSC 1317


>01_01_0060 + 477667-477816,479312-479722
          Length = 186

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 284 RHHKHRS-PSSSNPSLATKGSTSELTHRHSPLSFSPDL 174
           RHH H S  SSS+P  +TK + ++L H     ++   L
Sbjct: 32  RHHHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,607,383
Number of Sequences: 37544
Number of extensions: 242207
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)