Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M06
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   7.7  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 746 FGMDKKKYRMFESGAWDXT 690
           FG D+K+    +SG +D T
Sbjct: 48  FGSDEKRQAAIQSGEYDYT 66


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 690 GXIPRS*LEHSVFLFVHPESI 752
           G +P+  +  S+F F HPE +
Sbjct: 332 GYLPQDMVGRSLFDFYHPEDL 352


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 690 GXIPRS*LEHSVFLFVHPESI 752
           G +P+  +  S+F F HPE +
Sbjct: 38  GYLPQDMVGRSLFDFYHPEDL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,857
Number of Sequences: 438
Number of extensions: 970
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)