Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_M04
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 33 0.19
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 32 0.44
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 31 1.0
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 30 1.8
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983 29 4.1
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 4.1
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 29 5.5
05_01_0570 + 5061600-5062142,5062790-5062972 29 5.5
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 28 7.2
04_04_1330 - 32700333-32700770 28 7.2
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 7.2
02_05_0781 + 31715100-31715672 28 7.2
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 28 9.6
08_01_0554 - 4851698-4851943,4852041-4852760 28 9.6
05_07_0104 + 27715123-27715350 28 9.6
01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701 28 9.6
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 33.5 bits (73), Expect = 0.19
Identities = 26/81 (32%), Positives = 38/81 (46%)
Frame = +2
Query: 38 SYEVPAPRGRAGYVRLNDLQVLRADRGPKDFRAHPLNDSPALLHPTSDLRPGSEPVQSRG 217
S + P PRGR G VR + L +R D G ++ + A +H + R G+ ++R
Sbjct: 105 SKDAPLPRGRRGTVRSSKL--IRPDDGEEEGKEDENRGENAPVH--GEGRRGASR-RARA 159
Query: 218 VPAVNTTTRHAAPPRGRPTDG 280
P V TTR A P + G
Sbjct: 160 EPVVAPTTRRRAAPTSKIETG 180
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 137 HPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPR--GRPTDGSSRR*STT 304
HP + P L TS+ +PG PV++ G+ + +T R PPR G P S R S++
Sbjct: 405 HP--EGPKLHAITSESQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSS 460
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +1
Query: 160 TLTPDVRSPSGVRTRSE*GGSRGQHYNQTRGATPRTPDRR 279
TLTP RSPS R S G N TRGA+P +RR
Sbjct: 151 TLTPPRRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +3
Query: 240 PDTRRHPEDARP-TGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSERD 416
P HP D +P T S P T Q+A A ++ P G AG +
Sbjct: 11 PSVEDHPSDNQPATDNVEPSNEPPTG-------NQSAEAEVGANQEPPTGNQSDAGPSQK 63
Query: 417 TPPTGLLFNSMFGDDSDDEN 476
P NS G D+D E+
Sbjct: 64 VPEVEAQTNSPLGKDADSES 83
>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
Length = 145
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = -2
Query: 689 PFGAVPPPSGRGSEEGVCP---APAPMRRQSPP 600
P GAV PP G S GV P P P Q PP
Sbjct: 55 PSGAVYPPQGYPSSHGVYPPPQGPYPPPHQPPP 87
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 178 RSPSGVRTRSE*GGSRGQHYNQTRGATPR 264
+ PS +R+R GSRG+ Y+Q +PR
Sbjct: 122 KKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 197 EPVQSRGVPAVNTTTRHAAPPRGRPTDGSS 286
E + +RG T +HA PPRG P G +
Sbjct: 119 EKMMTRGRAETETARKHAPPPRGLPLLGEA 148
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 210 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTS 314
VGG ++ RR P TG G +RRPT++
Sbjct: 159 VGGARGRAVRGSARRRPRKEETTGINGTARRPTST 193
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 20 RVEGRTSYEVPAPRGRAGYVRLNDLQVLRADRGPKDFRAHPLNDS-PALLHPTSDLRPGS 196
R GR P R GYV+ D + AD+G A P ++ P +H T + P +
Sbjct: 139 RGRGRGRGRPPTKRKEVGYVQFEDESSMFADQG----EALPGEETVPETIHGTESVPPST 194
Query: 197 EP 202
P
Sbjct: 195 HP 196
>04_04_1330 - 32700333-32700770
Length = 145
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 178 RSPSGVRTRSE*GGSRGQHYNQTRGATPRTPDRRVVEAIVDDQR 309
R G E GG R +H + A+P P+R VV + + +R
Sbjct: 22 RRRGGGSDGEELGGGRDEHEGERERASPVEPEREVVGVVGERER 65
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -2
Query: 689 PFGAVPPPSGRGSEEGVCPAPAPMRRQSPP 600
PFG PPPS V P+ P PP
Sbjct: 145 PFGTAPPPSQGPFAASVPPSQGPFASAQPP 174
>02_05_0781 + 31715100-31715672
Length = 190
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 203 VQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STT 304
V + P RHAA P RP+ +SRR STT
Sbjct: 51 VSAAAQPQRAAKKRHAAAPPPRPSASTSRRSSTT 84
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -2
Query: 413 AFRPGRLVLAQRGIPEHQRHRPGGLVGPPYRG 318
AFR L A RG E Q+ GG GP YRG
Sbjct: 47 AFRYEALSAATRGFSERQKLGQGGF-GPVYRG 77
>08_01_0554 - 4851698-4851943,4852041-4852760
Length = 321
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 345 ARAVPLVFRDTPLGQNQPAG-SERDTPPTGLLFNSMFGDD 461
AR + F D LG N PAG E DTP LL F DD
Sbjct: 164 ARERGMSFGDALLGNNHPAGLREIDTP---LLDEKFFSDD 200
>05_07_0104 + 27715123-27715350
Length = 75
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 304 GRRLSPRRPVGRASSGWRRVS 242
GRRL P P R W RVS
Sbjct: 31 GRRLHPPAPAARGGGAWNRVS 51
>01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701
Length = 369
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 671 PPSGRGSEEGVCPAPAP 621
PP GRG GV PAPAP
Sbjct: 13 PPLGRGRLVGVGPAPAP 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,422,479
Number of Sequences: 37544
Number of extensions: 527459
Number of successful extensions: 2249
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2246
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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