Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M03
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    29   0.76 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   1.8  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   3.1  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    26   5.4  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.4  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.4  

>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 770 YSIKARPPYRXTXXXSGTTI*VDXXKAAGSPAXSVHWFKNDSPVYEYDVESNELIDSSPT 591
           Y ++   P+R T   SG+ + +   +       SV  FK+  P+YE DV      +SS  
Sbjct: 376 YLVRKGVPFRETHHISGSAVRMAEERNTTIDKLSVEDFKSLHPLYEEDVADVFNYESSVE 435

Query: 590 SIC 582
             C
Sbjct: 436 KRC 438


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -1

Query: 356 AASRDTPSPRSPGSTDRMCPLKRTRA*RCFARASWSYPPSSGATWTSTLAKPKTLSARRR 177
           A S D+P  +SPGS D+     R    R    +S   PP+  +T T  L++    +A   
Sbjct: 203 AKSDDSPVVKSPGSNDKPSASPRISV-RSLGNSSVVRPPTRTST-TRPLSRVNVTNASGS 260

Query: 176 LKHSST 159
           +  +ST
Sbjct: 261 ISKNST 266


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 105 VYLIWMFLLDKFVFDKAQCTRRMRNA 28
           VYLIW+   D FV  K +  R +RNA
Sbjct: 63  VYLIWLIYDDGFVTGKDRQKRWLRNA 88


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 305 FCPLNQVILGLGCPLTRHGSTTLFADVVHVGAIGDHDARLQREQLSAFRELSSAI 469
           +C +    + L   +  + S   FAD++  GAIG   AR    QL   REL+SA+
Sbjct: 142 YCDVTNFGIPLASEMLDNISPQFFADLLSFGAIG---ARTTESQL--HRELASAL 191


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 245 PPSSGATWTSTLAKPKTLSARRRLKHSSTPLN 150
           P  S   W +TL KP+++    R    S+P+N
Sbjct: 885 PHWSEHIWLTTLKKPQSIHVSGRFPQVSSPVN 916


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 395 GAIGDHDARLQREQLSAFRELSSAIC 472
           GAI  HD R+   Q+   +  SS +C
Sbjct: 283 GAIHHHDVRIANHQIGTLQGHSSEVC 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,196
Number of Sequences: 5004
Number of extensions: 53401
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)