Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_M01
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.004
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.26 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   0.83 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   5.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = -3

Query: 652 GXPPXPPPXGGGXGXXXXPPXPPPP 578
           G PP PPP  G  G    PP PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 597 GXXXXPXPPPXGGGXGGXPPPXP 665
           G    P PPP   G G  PPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 714 PPPPXPPPP 688
           PPPP PPPP
Sbjct: 775 PPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 652 GXPPXPPPXGGGXGXXXXPPXPPP 581
           G PP PPP  G       PP PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 30.3 bits (65), Expect = 0.34
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 655 GGXPPXPPPXGGGXGXXXXPPXPPPP 578
           G  PP PPP   G      PP PPPP
Sbjct: 7   GNPPPPPPPP--GFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect(2) = 0.83
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 714 PPPPXPPPP 688
           PPPP PPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 21.0 bits (42), Expect(2) = 0.83
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 594 PXPPPPXXXXGGG 556
           P PPPP     GG
Sbjct: 948 PPPPPPLVSAAGG 960


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 634 PPXGGGXGXXXXPPXPPPP 578
           PP G G      PP PPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP 343



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
 Frame = -3

Query: 646 PPXPPPXGGGXGXXXXPP----XPPPP 578
           PP PPP     G    PP     PPPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 579 GGGGXGGXXXXPXPPPXG-GGXGG 647
           G GG GG    P P P G GG GG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGG 212



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +3

Query: 582 GGGXGGXXXXPX-PPPXGGGXGG 647
           GGG GG       PPP  GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGG 209


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 713 PPPPXPPPP 687
           PPPP PPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 713 PPPPXPPPP 687
           PPPP PPPP
Sbjct: 189 PPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,676
Number of Sequences: 5004
Number of extensions: 22895
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)